GgaEX1043799 @ galGal4
Exon Skipping
Gene
ENSGALG00000000623 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr26:1736872-1737404:-
Coord C1 exon
chr26:1737310-1737404
Coord A exon
chr26:1737051-1737231
Coord C2 exon
chr26:1736872-1736979
Length
181 bp
Sequences
Splice sites
3' ss Seq
CATGCTTGTGCTGCGGGCAGGCT
3' ss Score
5.75
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GCCTTGAAGTATGAGTGCTACCTGGACAGCCCACTGGTGCGCTTCCTCATGAAGCGAGCAATCTGCGACCTGAAAATCACCCACTATTTCTTCTG
Seq A exon
GCTGCTGAAGGATGGCCTGAAGGACTCCCAGTTCAGCATCCGCTACCAGTACCTGTTGGCAGCTCTGCTGTGCTGCTGTGGGAAGGGGCTGCGGGAGGAGTTTGACCGGCAGTGCCTGCTGGTCAACACGTTGGCCAGGCTGGCCCAGCAAGTGAGGGACGCCGCGCCATCCGCACGCCAG
Seq C2 exon
GGCATCCTGCGTGAGGGGCTGGAGGAGGTGAAGCAGTTCTTCAAGGCTAACGGGTCGTGCCGACTGCCGCTCAGCCCCAGCCTGCTGGTGAAGGGGATCGTGCCCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000623-'21-24,'21-23,22-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061315=PI3Ka=FE(16.9=100)
A:
PF0061315=PI3Ka=PD(19.1=57.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTGAAGTATGAGTGCTACCT
R:
ACGATCCCCTTCACCAGCAG
Band lengths:
196-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]