RnoEX6044087 @ rn6
Exon Skipping
Gene
ENSRNOG00000029938 | Pik3c2b
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:RGD Symbol;Acc:1306541]
Coordinates
chr13:49893404-49894906:+
Coord C1 exon
chr13:49893404-49893498
Coord A exon
chr13:49893905-49894085
Coord C2 exon
chr13:49894799-49894906
Length
181 bp
Sequences
Splice sites
3' ss Seq
CCGCTTGCCCTGCCTTGCAGGTT
3' ss Score
10.36
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GCCCTGAAGTACGAGTGCTACCTGGATAGCCCCTTGGTGCGCTTTCTCCTGAAGCGAGCCATCTCCGACCTGCGAGTGACCCACTACTTTTTCTG
Seq A exon
GTTACTGAAGGACAGCCTCAAGGACTCCCAGTTCAGCATCCGTTACCAATACCTGCTAGCGGCCCTGCTGTGCTGCTGTGGCAAGGGACTGAGGGAGGAGTTTAACCGCCAGTGCTGGCTTGTCAATACCCTGGCCAAACTGGCCCAGCAGGTCCGAGAGGCCACCCCATCTGCACGCCAG
Seq C2 exon
GGCATCCTTCGTGCGGGCTTGGAGGAGGTGAGGCAGTTCTTTGCTCTCAATGGTTCGTGCCGTCTGCCGCTTAGCCCCAGTCTGCTGGTGAAAGGCATTGTGCCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029938-'31-29,'31-27,32-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061315=PI3Ka=FE(16.9=100)
A:
PF0061315=PI3Ka=PD(19.1=57.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTGAAGTACGAGTGCTAC
R:
ACAATGCCTTTCACCAGCAGA
Band lengths:
196-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]