DreEX6091598 @ danRer10
Exon Skipping
Gene
ENSDARG00000086927 | pik3c2b
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:ZFIN;Acc:ZDB-GENE-050309-145]
Coordinates
chr11:23365922-23368008:-
Coord C1 exon
chr11:23367914-23368008
Coord A exon
chr11:23366777-23366957
Coord C2 exon
chr11:23365922-23366029
Length
181 bp
Sequences
Splice sites
3' ss Seq
CCTCATCTCTGTGTTTGTAGGTT
3' ss Score
9.26
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
GCACTGAAGTATGAATGTTATCTGGACAGTCACCTGGTGCGTTTTTTGCTGAGAAGAGCCATCGGTGATGTGCGCATTGCTCACTACCTCTTCTG
Seq A exon
GTTGCTGAAAGACACTCTCCAGGACTCTCAGTTCAGCGTGAGGTATCAGTATCTGCTGGCGGCTCTGCTCTGCTGCTCCGGTCGTGGTTTAAGGGAAGAGTTTGATCGTCAGTGCTGGCTGGTCAATGTGCTGGCCAAAGTGGCTCAGCGGGTCAGAGAAGCGTCACCCTCATCCAGACAG
Seq C2 exon
GCTATTCTCCGCGAAGGGCTTGATGACGTAAAGCAGTTCTTCTCGATAAACAGCAGTTGTCGACTTCCGCTGAACCCAGGCCTGCTCGTCAAGGGCATCAACATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086927-'26-25,'26-24,27-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061315=PI3Ka=FE(16.9=100)
A:
PF0061315=PI3Ka=PD(18.6=55.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTGAAGTATGAATGTTATCTGGA
R:
TGTATGTTGATGCCCTTGACGA
Band lengths:
202-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]