GgaEX1044510 @ galGal4
Exon Skipping
Gene
ENSGALG00000008479 | PLEKHM3
Description
pleckstrin homology domain containing, family M, member 3 [Source:HGNC Symbol;Acc:HGNC:34006]
Coordinates
chr7:11595944-11616253:+
Coord C1 exon
chr7:11595944-11596101
Coord A exon
chr7:11608919-11608981
Coord C2 exon
chr7:11616229-11616253
Length
63 bp
Sequences
Splice sites
3' ss Seq
ACGCTAATTTGTGTTTGCAGGTG
3' ss Score
9.21
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GTTATTGAAGGAAAGCTGGCTCCTTTCTTGGGGAAGGTGATCAAGTTTGCCACCTCTCATGTGTACAGCTGTAGTCTCTGTAGTCAAAAGGGATTCATCTGTGAGATCTGTAACAACGGAGAAATCCTTTACCCCTTTGAAGACATTTCTACAAGCAG
Seq A exon
GTGTGAAAGCTGTGGTGCTGTCTTCCACTCTGAATGCAAAGTGAAGGCTGTACCATGCCCCAG
Seq C2 exon
GCACCTTTGGACTGCATCTCCATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008479_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF139011=DUF4206=FE(25.7=100)
A:
PF139011=DUF4206=FE(10.4=100)
C2:
PF139011=DUF4206=PD(3.0=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACCTCTCATGTGTACAGC
R:
TGGAGATGCAGTCCAAAGGTG
Band lengths:
132-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]