GgaEX1046432 @ galGal3
Exon Skipping
Gene
ENSGALG00000003776 | PRRC2B
Description
NA
Coordinates
chr17:6834176-6835928:+
Coord C1 exon
chr17:6834176-6834370
Coord A exon
chr17:6834808-6834894
Coord C2 exon
chr17:6835824-6835928
Length
87 bp
Sequences
Splice sites
3' ss Seq
TGTATGTTCCACTTCTTCAGGAC
3' ss Score
9.35
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GATTCAGATCAAGGCTCAGGACAGAACAAGGAACACAAGCCTGGACCAATCGGCAACGAACGCTCCCTGAAAAACAGAAAGGGTTCGGAGGGAACGGAACGGCTGGAAGGGAATATTCCCCCTGTTAATGGGGTGGAAATTCACGTGGATTCTGTACTTCCTGTGCCACCCATTGAATTTGGAGTAAATCCTAAA
Seq A exon
GACTCTGACTTCAGCTTGCCACCTGGTTCTGCTTCTGGCACAGCAGCTAATCCTGTCACCAAATTGCAGGATGCCTTGGCCAGTAAT
Seq C2 exon
GCAGGGTTAACGCAGTCCATTCCCATTCTGCGAAGAGATCACCACCTTCAGAGGTGCATTGGCCTGAACCCAATGTCCTTCCCCACTGCAGAGCTTACTCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003776-'27-32,'27-31,28-32=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.985 A=0.966 C2=0.429
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAAAGGGTTCGGAGGGAA
R:
AGGTGGTGATCTCTTCGCAGA
Band lengths:
169-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]