HsaEX1029679 @ hg38
Exon Skipping
Gene
ENSG00000130723 | PRRC2B
Description
proline rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr9:131482710-131484790:+
Coord C1 exon
chr9:131482710-131482907
Coord A exon
chr9:131483359-131483445
Coord C2 exon
chr9:131484686-131484790
Length
87 bp
Sequences
Splice sites
3' ss Seq
GGCCTTTTTTATTTTTTCAGGAC
3' ss Score
10.38
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GATTCAGAACAAGGCTCTGGACAGAGCAAGGAGCACAGACCAGGACCCATCGGCAACGAGCGTTCTCTGAAAAACAGAAAGGGCTCGGAGGGGGCCGAGCGGCTGCAAGGGGCTGTCGTCCCGCCTGTTAACGGGGTGGAGATTCACGTGGACTCCGTGCTGCCTGTGCCACCCATTGAATTTGGAGTCAGTCCAAAA
Seq A exon
GACTCCGATTTCAGCTTGCCACCTGGTTCTGCCTCTGGTCCTACTGGGAGTCCAGTTGTTAAACTTCAGGATGCCTTGGCCAGTAAT
Seq C2 exon
GCAGGGTTAACACAGAGTATCCCCATCCTGCGGCGGGACCATCACATCCAGAGGGCCATCGGTCTCTCCCCAATGTCCTTCCCCACCGCCGACCTTACTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130723_MULTIEX6-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.985 A=0.912 C2=0.473
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACGGGGTGGAGATTCACGT
R:
CTTCAGAGTAAGGTCGGCGGT
Band lengths:
175-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains