GgaEX1046867 @ galGal4
Exon Skipping
Gene
ENSGALG00000028529 | PTGDS
Description
prostaglandin-H2 D-isomerase precursor [Source:RefSeq peptide;Acc:NP_989590]
Coordinates
chr17:509034-509676:-
Coord C1 exon
chr17:509575-509676
Coord A exon
chr17:509396-509421
Coord C2 exon
chr17:509034-509173
Length
26 bp
Sequences
Splice sites
3' ss Seq
TGCTTTTCTTCTTTCTGCAGACA
3' ss Score
11.35
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GCCGCACCAAGGAGGTTGCACCCCAGCGCCTGGAGAGGTTCATGCAGTTCTCCCAGGAGCAGGGCCTGAAGGACGAGGAGATCCTCATCCTACCCCAGACGG
Seq A exon
ACAAGTGTATGGCAGATGCTGCCTAG
Seq C2 exon
ACTGCTGCTGGATGGAGGTCCAAGAGCGCCATGAGCCGACAGCCACCCCATCCCAACCCCAGCGCCATATCCACCTTTACTTCCTGGCTTTGCACCCCGCATATCTGCCCCTGTCCCTATTAAAGCCCATATAAACCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028529_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=0.125 C2=NA
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(23.8=100)
A:
PF0006118=Lipocalin=PD(0.1=0.0)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTCATCCTACCCCAGACG
R:
GGGTGCAAAGCCAGGAAGTAA
Band lengths:
119-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]