BtaEX6047640 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015074 | PTGDS
Description
Bos taurus prostaglandin D2 synthase 21kDa (brain) (PTGDS), mRNA. [Source:RefSeq mRNA;Acc:NM_174791]
Coordinates
chr11:106247577-106248813:-
Coord C1 exon
chr11:106248712-106248813
Coord A exon
chr11:106248079-106248104
Coord C2 exon
chr11:106247577-106247730
Length
26 bp
Sequences
Splice sites
3' ss Seq
CTGGGCTTCTTTCTTGGCAGACA
3' ss Score
8.26
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GCCGCTCCCAGAACCCCCGAGCCGAGGTCAAGGAACACTTCACCACCTTTGCCAAGAGCCTGGGCTTCACAGAGGAAGGCATTGTGTTCCTGCCGAAGACTG
Seq A exon
ACAAGTGCATGGAGGAGCACCCATAG
Seq C2 exon
GTGAGTCTGCCTCTCAGGACCTGGCCCTTCTGCCCTGCTCAGCCGTTTTCTGCAACACCCGAGACCCCAGCCTGAGACCCCAGCCCCGGCCCCTCGCCATCCATGCCCCCCTCAGCCTTTATTCCCGCTCTGAAAATAAACTCTGAAGCAAGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015074-'11-18,'11-15,13-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.250 C2=NA
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(23.4=100)
A:
PF0006118=Lipocalin=PD(0.1=0.0)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCACCACCTTTGCCAAGAGC
R:
GTGTTGCAGAAAACGGCTGAG
Band lengths:
122-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]