RnoEX0070947 @ rn6
Exon Skipping
Gene
ENSRNOG00000015550 | Ptgds
Description
prostaglandin D2 synthase [Source:RGD Symbol;Acc:3433]
Coordinates
chr3:2686123-2687265:-
Coord C1 exon
chr3:2687164-2687265
Coord A exon
chr3:2686698-2686753
Coord C2 exon
chr3:2686123-2686243
Length
56 bp
Sequences
Splice sites
3' ss Seq
CTGGGCTTCTTTCTCAACAGATA
3' ss Score
10.49
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GCAGAGCCCAGCTTCTGAAGGAGGAACTGAAGGAGAAATTCATCACCTTTAGCAAGGACCAGGGCCTCACAGAGGAGGACATTGTTTTCCTGCCCCAACCGG
Seq A exon
ATAAGTGCATTCAAGAGTAAACACAGGTGAGAGAAGTCAGTCACAGGTAACACATG
Seq C2 exon
GTGATGTGGCCTCAGGACTCCCGTGCTCTGTCACTCTTGAGACCCAAGCCCTGGCTCCCCAAAGACCTTCTCCGCCCTCCAGCTTTGCCTTGGTGGAGAAATAAAATCCAAAGCAAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015550-'10-14,'10-13,14-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(23.4=100)
A:
PF0006118=Lipocalin=PD(0.1=0.0)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCCCAGCTTCTGAAGGAG
R:
CTCAAGAGTGACAGAGCACGG
Band lengths:
141-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]