HsaEX6064137 @ hg38
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr9:136980183-136983708:+
Coord C1 exon
chr9:136980183-136980284
Coord A exon
chr9:136980833-136980855
Coord C2 exon
chr9:136983569-136983708
Length
23 bp
Sequences
Splice sites
3' ss Seq
CCTGGCTTCTTTCTTGGCAGATA
3' ss Score
10.4
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
Exon sequences
Seq C1 exon
GCCGAACCCAGACCCCCAGGGCTGAGTTAAAGGAGAAATTCACCGCCTTCTGCAAGGCCCAGGGCTTCACAGAGGATACCATTGTCTTCCTGCCCCAAACCG
Seq A exon
ATAAGTGCATGACGGAACAATAG
Seq C2 exon
TTCCAGGGCACCTGGTACATGGTCGGGGTGGTGTCAGATGACCAGGACTTCCTGGACTCCAAGGACACCATGAAGATGGCTGTGGTCTTAGTGACCCCCTTGGGGAATGGTGACCTGGCCCTCAAGTTTGGATACCCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000284341-'14-25,'14-17,15-25
Average complexity
S
Mappability confidence:
0%=0=0%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(23.4=100)
A:
PF0006118=Lipocalin=PD(0.1=0.0)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGGGCTTCACAGAGGATA
R:
TCCTTGGAGTCCAGGAAGTCC
Band lengths:
110-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains