HsaEX6064137 @ hg19
Exon Skipping
Gene
ENSG00000107317 | PTGDS
Description
prostaglandin D2 synthase 21kDa (brain) [Source:HGNC Symbol;Acc:9592]
Coordinates
chr9:139874635-139876193:+
Coord C1 exon
chr9:139874635-139874736
Coord A exon
chr9:139875285-139875307
Coord C2 exon
chr9:139876031-139876193
Length
23 bp
Sequences
Splice sites
3' ss Seq
CCTGGCTTCTTTCTTGGCAGATA
3' ss Score
10.4
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
Exon sequences
Seq C1 exon
GCCGAACCCAGACCCCCAGGGCTGAGTTAAAGGAGAAATTCACCGCCTTCTGCAAGGCCCAGGGCTTCACAGAGGATACCATTGTCTTCCTGCCCCAAACCG
Seq A exon
ATAAGTGCATGACGGAACAATAG
Seq C2 exon
GACTCCCCAGGGCTGAAGCTGGGATCCCGGCCAGCCAGGTGACCCCCACGCTCTGGATGTCTCTGCTCTGTTCCTTCCCCGAGCCCCTGCCCCGGCTCCCCGCCAAAGCAACCCTGCCCACTCAGGCTTCATCCTGCACAATAAACTCCGGAAGCAAGTCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107317-'10-14,'10-12,11-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=0.398 C2=NA
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=PD(18.6=84.6)
A:
PF0006118=Lipocalin=PD(0.7=11.1)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCATTGTCTTCCTGCCCCA
R:
GGGGAAGGAACAGAGCAGAGA
Band lengths:
106-129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)