GgaEX1046995 @ galGal4
Exon Skipping
Gene
ENSGALG00000011078 | PTPN13
Description
protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase) [Source:HGNC Symbol;Acc:HGNC:9646]
Coordinates
chr4:45262669-45270335:-
Coord C1 exon
chr4:45270227-45270335
Coord A exon
chr4:45264926-45265181
Coord C2 exon
chr4:45262669-45262891
Length
256 bp
Sequences
Splice sites
3' ss Seq
CTGCCTGTATCTGTCAACAGTAT
3' ss Score
7.6
5' ss Seq
AGTGTAAGG
5' ss Score
5.2
Exon sequences
Seq C1 exon
GTTTGCCAGTGAGAAGAAATGAAGGATTCAAGAGAGATGATGCCGGTGGTGCTTTACCAGGTGCTGATGATATCTCCACATCAAGTCAAGCTCATTCTCAGAGGGCAAG
Seq A exon
TATCTTCTCTACTGACAAAGGAGAGGTGCAGTCCTGATCTTGGAAGCCTGAGAGTGGACTATACTCCACCTTCCATTGAAAGCTGTCTGCCTGAGCCTGGCATTAACCAAGATGTCAATTTGCTTTCTCGAAGTGATGACAGCATTTGTATCCTGCACCAGAAAAATGCTTGAAGCAGTACATTTTTGAGCTTCCTCCCACTTGCCCCCATGCAGTATTTCAGTAAAATGCATGTGAATTTAGAAGACAAAGCAGT
Seq C2 exon
CAGGCAGCATGAAGCACCATTTGAAGGCAATCTCGTCAGTCAAGAAGCAATGCTAAAGCGCCAGGAAGAAGAAATGCTACAGCTGCAGGCTCGCATGGCTCTCAGGCAGTCCCGGCCCAACCTCTACTCTGGAGATGCAATCCGGTCCTCTATGCTGGATATCACAAGAGATCCACTCAGAGAAATAGCCCTGGAAACAGCCATGACTCAAAGGAAACTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011078_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.973 A=0.917 C2=0.347
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000018050fB11101
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGAGAGATGATGCCGGTGG
R:
TTGAGTCATGGCTGTTTCCAGG
Band lengths:
292-548
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]