GgaEX1048325 @ galGal3
Exon Skipping
Gene
ENSGALG00000008150 | RASAL1
Description
NA
Coordinates
chr15:11516315-11516788:-
Coord C1 exon
chr15:11516675-11516788
Coord A exon
chr15:11516525-11516586
Coord C2 exon
chr15:11516315-11516444
Length
62 bp
Sequences
Splice sites
3' ss Seq
CCATCGGTGTCACCCTACAGGCA
3' ss Score
7.68
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
AACAGCCACGGTGTGGAGAAGCCTGAACCCATTTTGGGGTGAGGAGTTCACCCTGCGCCTGCCCGGCGGCTTCCACAGCCTCACCATCTACGTGCTGGATGAAGACACCATTGG
Seq A exon
GCACGATGACGTGATCGGCAAAGTGTCGCTGAGCCACCAGCAGATCTCTGCACAGCCGCGAG
Seq C2 exon
GCATTGACAGCTGGCTCAGCCTGGCGCCTGTGCATCCTGACCAGGAGGTGCAGGGTGAGATCCACCTGGAGGTGAGGATGCCTGAGCAGGGCCACCCACGGGTGCTGCGCTGCCACCTCATTGCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008150-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.159
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(57.6=100)
A:
PF0016825=C2=PD(13.6=40.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCCACAGCCTCACCATC
R:
CTCAGGCATCCTCACCTCCAG
Band lengths:
132-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]