GgaEX1051152 @ galGal4
Exon Skipping
Gene
ENSGALG00000010943 | SCN1A
Description
sodium channel, voltage gated, type I alpha subunit [Source:HGNC Symbol;Acc:HGNC:10585]
Coordinates
chr7:19126510-19128455:+
Coord C1 exon
chr7:19126510-19126683
Coord A exon
chr7:19127487-19127575
Coord C2 exon
chr7:19128387-19128455
Length
89 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTAATTTGGTATTAGATT
3' ss Score
5.57
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
GCTTTTGAAGATATATATATTGAACAGCGCAAAACTATCAAGACCATGCTGGAATATGCTGACAAAGTCTTCACTTACATCTTCATTCTGGAAATGCTGCTGAAGTGGGTGGCCTATGGCTATCAAACATACTTTACTAATGCCTGGTGCTGGCTGGACTTCCTGATTGTTGAT
Seq A exon
ATTATGAGAGCATGAAAAATCAAGTTTTCAATAGCATAATGAAGGTATTGGAGAAAAAAATCAGATTCCAGAAGGTCCTAGTTTTGCAG
Seq C2 exon
ACTTCGTATTCCTGAAGAAAGTGGTCCAAAATTAGATTCTTCTAAAGAAGTTTGTGTCTCACATCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010943-'22-23,'22-22,23-23
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NA
A:
PF065128=Na_trans_assoc=PD(1.1=40.0)
C2:
NA
Main Inclusion Isoform:
ENSGALT00000017814fB11728
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCGCAAAACTATCAAGACCA
R:
TGGACCACTTTCTTCAGGAATACG
Band lengths:
179-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]