GgaEX1051649 @ galGal4
Exon Skipping
Gene
ENSGALG00000010697 | SEMA4D
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D [Source:HGNC Symbol;Acc:HGNC:10732]
Coordinates
chrZ:43457690-43461836:-
Coord C1 exon
chrZ:43461793-43461836
Coord A exon
chrZ:43460366-43460692
Coord C2 exon
chrZ:43457690-43457896
Length
327 bp
Sequences
Splice sites
3' ss Seq
TATTTATTTTGGTGTTCCAGATA
3' ss Score
8.28
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
GAATTGGATTCAGAACATAGGTGGAGATGCATCTTCTTGTTCTG
Seq A exon
ATAAAGTAAGAGAGAATTCGCTACAGCATACGTTCAAGCATGGGAGCACAGCAGAGCTCAAGTGTTCTCAGAAGTCCAATCTGGCACAGGTAGTTTGGAAGTTCAGAGATGACGTACTGAGAGTGGAGAGTCCCAAATACCGGCTACTGGAAAAGGCGCTACTCATCTTCAATTTATCAGAAGGAGACAGTGGTGTTTACCAGTGCCTGTCAGAAGAAAAAGTGAAGAATAAGAAATTCTCTCAGGTGTTGGCTAAGCATGTTTTGGAACTGAAGAAAGTCCAGCATACTACGGCAAGCCCATTGGTGGCAGCTGCATCAACAGAAG
Seq C2 exon
CCTCATCTCCTATACCTTTCCCTCCTTCTGGTACTTCCTTTTTGTCTTGTGTGGGATGTGGTCCACCTCCTTCACCCACCAGTATCGAGCCTGATGTTTGGTCTAGCACAGACCCTCTAAAGGTCGTGTTGTTGCAACCTTTCCTAAATGACCAGGCACAGCATGTTAGTGCTCGAGGACCCTTCCACCTCTTCTGCCAAGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010697-'16-25,'16-22,17-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.009 C2=0.071
Domain overlap (PFAM):
C1:
PF0143720=PSI=FE(22.7=100)
A:
PF0143720=PSI=PD(18.2=10.9),PF138951=Ig_2=WD(100=72.7)
C2:
PF138951=Ig_2=PU(26.4=34.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTCAGAACATAGGTGGAGATGC
R:
CTGTGGCTTGGCAGAAGAGG
Band lengths:
246-573
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]