RnoEX0079331 @ rn6
Exon Skipping
Gene
ENSRNOG00000013679 | Sema4d
Description
semaphorin 4D [Source:RGD Symbol;Acc:1310554]
Coordinates
chr17:13534885-13538914:+
Coord C1 exon
chr17:13534885-13534928
Coord A exon
chr17:13536189-13536518
Coord C2 exon
chr17:13538711-13538914
Length
330 bp
Sequences
Splice sites
3' ss Seq
CATTTATTTTGATGTTCCAGATA
3' ss Score
8.25
5' ss Seq
AAGGTAGTA
5' ss Score
5.69
Exon sequences
Seq C1 exon
GGGCTGGATTCAGGACATGAGTGGCGACACGTCCTCGTGCCTGG
Seq A exon
ATAAGAGTAAAGAAAGTTTCCATCAGCATTTTTTCAAGCACGGCGGCACAGCAGAACTCAAGTGTTTCCAAAAGTCCAACCTGGCCCGGGTGGTGTGGAAGTTCCAGAACGGCGAGTTGAAGGCTGTGAGTCCCAAGTATGGCTTTGTGGGCAGGAAGCACCTGCTCATCTTTAACCTGTCAGACGGAGACAGCGGTGTGTACCAGTGCCTGTCAGAGGAAAGGGTCAGGAATAAAACGGTCTCCCAGCTGCTCGCCAAGCACATCCTGGAAGTGAAAATGGTAGCTCGGATCCCCCCATCACCTACCTCACAGACTGCTCAGACAGAAG
Seq C2 exon
CCTCATCTCCTAAGTCCTTCCCTCCTCCTGGCTCCTCTCTGTCCTGTCTGGGCCCTGACTCATCTTCTCCCAGAAGCCCTTGGTCGGCCTTGGCCTCAGGGCCCAACAGCCGTAAGCAGGTCGCCTTGCTGCCACCCTTCTTGAGTGACCAGGCACAGCGGGTGCAGGCGCTGGGGACCTTCTACCTCTTCTGCCAGGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013679_MULTIEX1-1/4=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.078 A=0.200 C2=0.237
Domain overlap (PFAM):
C1:
PF0143720=PSI=PD(26.4=87.5)
A:
PF0768612=V-set=WD(100=73.9)
C2:
PF138951=Ig_2=PU(26.4=34.8)
Main Inclusion Isoform:
ENSRNOT00000076794fB13115
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTGGATTCAGGACATGAG
R:
GTGGCCTGGCAGAAGAGGTAG
Band lengths:
246-576
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]