RnoEX0079332 @ rn6
Exon Skipping
Gene
ENSRNOG00000013679 | Sema4d
Description
semaphorin 4D [Source:RGD Symbol;Acc:1310554]
Coordinates
chr17:13534885-13548990:+
Coord C1 exon
chr17:13534885-13534928
Coord A exon
chr17:13538711-13538914
Coord C2 exon
chr17:13548781-13548990
Length
204 bp
Sequences
Splice sites
3' ss Seq
TTCTGTCCTCTGTCTCACAGCCT
3' ss Score
9.53
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGGCTGGATTCAGGACATGAGTGGCGACACGTCCTCGTGCCTGG
Seq A exon
CCTCATCTCCTAAGTCCTTCCCTCCTCCTGGCTCCTCTCTGTCCTGTCTGGGCCCTGACTCATCTTCTCCCAGAAGCCCTTGGTCGGCCTTGGCCTCAGGGCCCAACAGCCGTAAGCAGGTCGCCTTGCTGCCACCCTTCTTGAGTGACCAGGCACAGCGGGTGCAGGCGCTGGGGACCTTCTACCTCTTCTGCCAGGCCACAG
Seq C2 exon
GTCCAGCAGACATCCGCTTCATCTGGGAGAAGAACAGGCGTGTCCTGGAGACATGTGTACCTATGCAGACCCATGCGCTGCCTGATGGCAGGGCCCATGCCCTCAGCTGGCTTCGGGACACCATCCAAGAAACCACGGAATACAGCTGCTCTGTCCTCTCCTCAGCAGGGAACCAGACCTCAAAGGTTCACGTCACTGTGATGAGACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013679_MULTIEX1-3/4=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.078 A=0.237 C2=0.028
Domain overlap (PFAM):
C1:
PF0143720=PSI=PD(26.4=87.5)
A:
PF138951=Ig_2=PU(26.4=34.8)
C2:
PF138951=Ig_2=PD(72.5=93.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTGGATTCAGGACATGAG
R:
TGTCTCATCACAGTGACGTGA
Band lengths:
252-456
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]