GgaEX1051650 @ galGal4
Exon Skipping
Gene
ENSGALG00000010697 | SEMA4D
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D [Source:HGNC Symbol;Acc:HGNC:10732]
Coordinates
chrZ:43448664-43460692:-
Coord C1 exon
chrZ:43460366-43460692
Coord A exon
chrZ:43457690-43457896
Coord C2 exon
chrZ:43448664-43448867
Length
207 bp
Sequences
Splice sites
3' ss Seq
TGTCCTCTTCTGTCACACAGCCT
3' ss Score
7.9
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
ATAAAGTAAGAGAGAATTCGCTACAGCATACGTTCAAGCATGGGAGCACAGCAGAGCTCAAGTGTTCTCAGAAGTCCAATCTGGCACAGGTAGTTTGGAAGTTCAGAGATGACGTACTGAGAGTGGAGAGTCCCAAATACCGGCTACTGGAAAAGGCGCTACTCATCTTCAATTTATCAGAAGGAGACAGTGGTGTTTACCAGTGCCTGTCAGAAGAAAAAGTGAAGAATAAGAAATTCTCTCAGGTGTTGGCTAAGCATGTTTTGGAACTGAAGAAAGTCCAGCATACTACGGCAAGCCCATTGGTGGCAGCTGCATCAACAGAAG
Seq A exon
CCTCATCTCCTATACCTTTCCCTCCTTCTGGTACTTCCTTTTTGTCTTGTGTGGGATGTGGTCCACCTCCTTCACCCACCAGTATCGAGCCTGATGTTTGGTCTAGCACAGACCCTCTAAAGGTCGTGTTGTTGCAACCTTTCCTAAATGACCAGGCACAGCATGTTAGTGCTCGAGGACCCTTCCACCTCTTCTGCCAAGCCACAG
Seq C2 exon
GTCCAGATGACTCCCATTTTGTCTGGAAGAAGAATGGACAGGAAATGAAGGCATGCATCACTGAGCAGGCTCACAGGCTGTTTGATGGCAGAGTGCATGTCTTAAGTTGGGTGAAAGATTCAGTATCAGGAAACACAAAATATAAATGTTCATTCATCTCAAGGATTGGGAACACAACATCAGAAGTGCTCATCAAAGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010697-'17-28,'17-25,19-28
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=0.071 C2=0.014
Domain overlap (PFAM):
C1:
PF0143720=PSI=PD(18.2=10.9),PF138951=Ig_2=WD(100=72.7)
A:
PF138951=Ig_2=PU(26.4=34.3)
C2:
PF138951=Ig_2=PD(72.5=95.7)
Main Skipping Isoform:
ENSGALT00000037939fB11782
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAAATACCGGCTACTGGA
R:
CACTCTGCCATCAAACAGCCT
Band lengths:
292-499
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]