HsaEX0057114 @ hg19
Exon Skipping
Gene
ENSG00000187764 | SEMA4D
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D [Source:HGNC Symbol;Acc:10732]
Coordinates
chr9:91978656-91996013:-
Coord C1 exon
chr9:91995970-91996013
Coord A exon
chr9:91991748-91991966
Coord C2 exon
chr9:91978656-91978865
Length
219 bp
Sequences
Splice sites
3' ss Seq
CTGTCCTCTCTGTCTCACAGCCT
3' ss Score
10.41
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGGTTTGATTCAGGAGATGAGCGGCGATGCTTCTGTGTGCCCGG
Seq A exon
CCTCGTCTCCTAAGCCCCTCCCTCCTCCTGGCTCCTCTTCCCTGTCCTGTCTGGGCCATGTGGGGGACAGGAGGCTTTCCTCTCCCTGGACCCCCTGGCCAGCCTCGGGTGCGGGGCCCGACAGCAGCTCGAGGGTCTCCTTGCTGCCGCCCTTCCTGAGTGACCAGGCACAGCACGTGCACGCCCTGGGGAACTTCTACCTCTTCTGCCAGGCCACAG
Seq C2 exon
GTCCTGCAGACATTCGCTTTGTCTGGGAGAAGAATGGGCGAGCTCTGGAGACCTGTGTCCCTGTGCAGACCCATGCACTGCCCGATGGCAGGGCCCATGCACTCAGCTGGCTGCAGGACGCCATCAGGGAAAGCGCTGAGTATCGCTGCTCTGTCCTCTCCTCAGCAGGGAACAAGACTTCGAAGGTGCAGGTTGCTGTGATGAGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187764_MULTIEX3-4/4=3-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.097 A=0.284 C2=0.073
Domain overlap (PFAM):
C1:
PF0143720=PSI=PD(26.4=87.5)
A:
PF138951=Ig_2=PU(26.4=32.4)
C2:
PF0765410=C1-set=WD(100=78.3)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTTTGATTCAGGAGATGAGCG
R:
GGTCTCATCACAGCAACCTGC
Band lengths:
252-471
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)