HsaINT0147370 @ hg19
Intron Retention
Gene
ENSG00000187764 | SEMA4D
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D [Source:HGNC Symbol;Acc:10732]
Coordinates
chr9:91978656-91991966:-
Coord C1 exon
chr9:91991748-91991966
Coord A exon
chr9:91978866-91991747
Coord C2 exon
chr9:91978656-91978865
Length
12882 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GAAACGGTCTGTGTCCCCAGGTC
3' ss Score
8.92
Exon sequences
Seq C1 exon
CCTCGTCTCCTAAGCCCCTCCCTCCTCCTGGCTCCTCTTCCCTGTCCTGTCTGGGCCATGTGGGGGACAGGAGGCTTTCCTCTCCCTGGACCCCCTGGCCAGCCTCGGGTGCGGGGCCCGACAGCAGCTCGAGGGTCTCCTTGCTGCCGCCCTTCCTGAGTGACCAGGCACAGCACGTGCACGCCCTGGGGAACTTCTACCTCTTCTGCCAGGCCACAG
Seq A exon
GTGAGTTGGGCCCTCTCTGTCCCCTGTGCCCTGTCCATCTGTCTCCTCCCACAGGTGGGGGGCGGGCGGGGGCATCCTCCACATCCCTCCACATGTTCCTTTACCTTCCTTATCTGTCCTGGCTGCGTCCCTCGGGTTGAGCCGTTTCACGCTTTCATTGTGGGTCCATCCCGAGGGAAACTGTAGACAGTGTGAAGCCACTTCTAGTGTACAGGGGTCAACCAGTGTTTTCTGTAAAGGGCTAGATATTTAGGCCTTGTGGGCTGCAGGCTGTGTCACAGCCACTAAGCTCTGCTGTTGTATTGTAAAACCAGCCATAGTCAATACACAACGAGTGGTCAGGGCTGTGTGCCAGTAAAACTTTATTTATAAAAATGCACGGTGGGCCAGATTTGCCCCAAAGGCCCCAGTTTCCCAACCTGTGGTATATAGGATTGCTTCTCCCTTAAAAAAAAAAAAAATTTCAAGAGACAGGGTCTCCCTCTGTCACCAAGGCTGGAGTGCAGTGACACAATCATAGCTCACTGCAGCCCCTGCCTCCTGGGCTTAAGCCATCCTCCTGCCTCAGCCTCCAGAGCCAGAGTGCTTCTATTTCTGCTAACAATTTGGAGGTTGATATACGTGGTATTTGGAAATTTTAAAAAATTAAGAGCTTCCAGAATGGGAGTTGTTTTAATGACTTGCTTCGTGGTATTTAAAAGCGGAAAAGATTGGCGGGCATAATCCCCCTGCTTTGGGAGGCCAAGGCAGGAGGATTGCTTGAAGCCAGGAGTTTCACAGCAGCTTGAGCAACATAGCGAGACCTGATCTCTACCCAAAAATGTGAAAAAAACTAACCAGGCTTGGTGGCACGTGCCTTGAGGATTGTTTGAGCCCAGGAGTTTGAGGTTACAGTAAGGTATGATGGTGCCACTGCACTCCAGCCTAGATCACAGAACAAGACCCTGTCTCAAAAATCATCATCATTATAAAAACAGAAAAGATTGAGAGTCTAGTGTACTCCTCTGGGACCTGGAGGCATTTGCCCTGGATTGGAAAATACTCGGATGGGATATCTGCTCTTGAAAGATAGTAGATGTCCAGAACCACACTTCAAAGATGTATCCTGTGCTTCAGGCAGTGCGTGGTAGCCCTGGTGGCCCCTGTGTTGTCATCTGACTGATCAGTAGATACAGAAAGAAAGGAAGTGGCCTGTTAGAGCCTGCCCCGGGGGAGGGATGAAGTTAATGAAGAGGAAAAGCAAACCCAATTGCTCTCTTTTTAAACATGTTAAACACACTGTCAGTAGCTCCTGAGAGTTTTAAGGTGCTGCCCTCTCCTGTTAAACAAGCTCTGAGAGCCCCAGGTGGCCCATGTCTGCTGAGGCCAGAATGTCCCTTGGCAGCCAGCACTGGACAGGAGAAGCTGCCGGTGAGCATGGAGCACTGTGGAGACGGAGCTTTGCTAGGCTGGCTTGTGTGGTTCCTGCCCTCCACTGGGTGCTACGGACCAAGGCTGTGCTGAGCCCCCTGTGGCCGCTCTCACAGCTGAATGGTGCTCCTCGGCCAGCTAGTTTGCCTTGGTGCAGGCATCCCAGAGGACTTCATGTCTCCATGGAGACTGTGTCCTGTCGCAGCACTGGGGTCCTTCAGGCAGACTCAGGAAGCTCCTCCTCGGTGGGGAGGCTGGGAAGCGGGCGGGTCTCTATGAACTGGCCGTGGACCCAGGGCTCCTTTGCGGGCAGATGCAGGCAGGCTGTATGGTCAGGCAATGTTGGTTGGTTATTTATTTATTTATTTTTGAGGCAGAGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCACGATCTTGGCTCACTGCAAGCTTCGCCTCCCAGGATCAAGCGATCCTCCTGCATCAGCCCCCCTAGTAGCTGGGATTACAGGCACACCTCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCGCCATCTTGGCCAGGCTGGTCTCAAACTACTGACCTCAGGGGATCCACCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCATGCCCGGCTGCTGTTACATTTTTAAATGTGAGGCTCCAGGTGTACCCCCTGTAGCTAGGCAGGCATACACACAAGCCCCTGGGGTCAGCAGGGAATGAAAGATGGGTGCCCAGGGAGAAGGGACATCACTGTTACAGCAACAGAAACCACCCCAGATATTTCAACCACAGGGCATTTAACACAGGGAATTGGTTACAAAGGTGATAGAAGGGCTGGGAACAGTGGGAAGGTGAGGTTTCCATTATCAGCCATGGGCAGGAAGAGTGAAGTGTCAAACACTCAGTCTCACTTGCTGTGCCACCGAGGCTGTGGCCGTGTGATCTGCAGCCTCTCCCTGCCCGCCACACTGCCTTCACTGCTGGAGGTCCTACTTGAAGCCACAAAAATGTTTCTTCCTTCCAACTTCCTGTCTCCTGTCAATGACTCCCATGGCCAGACCTAACAGAAAGCTGGCGGTCACAGATGGATATGGGGAATGTAGCTGTGGGCTTGCAGCAGTGTGGCCAGGAGTAGTGTGTAGAGGGTAGGGGAGCTGAGGGAGGAGGGCAGTCCTTTGCCAGTGCTCAGGATGGACTGAACAGATTGAGAACTGAGGCCCCCAGCCCTCCGCCACCCCCTTTTCACGTGGTCTTTACTTTCTCTCCAGAGGCATTTGGCCCCATCTGGGACATTCTCGTTCACTTGTTCCACTGAGGCCACAGCCTGCGAAGGCTGTGAGACCTCCCCAGGGAGCACCAGCTTAGGAGAGAGTGGCTTCAGCCTTTTCAAGGGTGGGCCGAGGCCAGGGCATCATGGGCATGCCGTGAACTCAGAGGGGCTGTGGCTGTGAATTTCCCGAGTAGGCTCCAGGGTTCTGTTGGGGTCTGTAGATGCTTCCTGCGACAGAGGCCACAGTGTGACTTGCAAGTCCCAGAGACTTTCCTGAGGAGAGTGAGTGCCATTTTCTGCCTTGTGGGCCAGGAATGAGCCATTCCAGGTGAGGCCCAGAGCCTGGAGATTGCAATACAGTGCACTCAAGGCACAGGCCTACCGCTTCTGCCTGTGTCCTCCCCCAGCCACCCAGGGCAGGGCTGCTTTGGAACTTGGCTGGGTTTTTCTTTGCTATAATGGCTGTTTTCGTGGTAGCTGTCACAGTGGTTTGGGGGCTGTCTGATTAAAGGGCTAGCAAAGTGTCTTTAGAATATGAAACTTAAGAGGACATTCGTGGCATCTTCAGTTCCCCATGCTGCGTCCTGGTGCCTGTAGCTCTGCTGGGTGACCCTGTGTCTTGGGGAGCGTCTCACCCCCCAGAGAGGGCTGACTGATGGAAGGTCAGCTGGTCAGGGTTGCACTTGGGGACTGGGTCTGCCCCAGAGCTGGTGGAGGCCCATGTGTCACCCAGGAGATGTCCCCACCTGCCCCAACACTTGGCCAGTGCTCAGAAAGTGGCCCCAGGGACTTGGCCATCCAGGAGAGGTGAGGGCCCTCTGAGGCCAAAGCGCTTCCTGAAAGGGGATCGGGGTGGGTCTGCACAGGGGAAAACATAGCCTGTGGTGTGTGCAGAGGCTGCCAGGGCACAAGGGCCCAACGTGGGGTGCGGTGGAGGTGATGTGGCCACGTGGGCGGAGTAGGGCGGAGAGGCCTGTGTCCTGGGGATGCGAGAGCTTGAGGCCTGGTGGTGGGGTGGAGGCCCACCCTTGTCCTGCACCCAGGGGCCTCAGTGCCCATCCAAGGGAGGGACAGGGCCACACCTGTGGGCCTGTGTCAGGAGCTGGGGTGGGAGATTGGCCACCAGTGCCACTCTCCACCTAGACACATTTCATCCCTTCTCCACCACAGTTCTCGCCTCTAGGAAGTGGAATTATCAGTGGAAGATGATACGGAAAGATCCACTGATGGCCCTGGCACAGGCCAGCCTTGTCCCTGGGGCAGGATGGGACGGTCCTGAGAAGGCCCTGGGACACCCTAGGGGTGTCATAGTGGGAACTATGCCTTTGCAGTGCCCAGGTGAGACAGCACATGGTGTCACCCCAAGCATGGTACCCTGGGCTCAGTGACAAGAGGGGTGGGCAGGTCAGGACTGCACTGCCTTGGGGCCCGTGCCCTGGGAGCCGCTAGCCCTATGATCCTGAGTCCTGGGGGACTGAGTGCATCGGCAGGGCCTGGAGCAGCTGGGAGTGGCCGACTGCCTCAGTGTGCACTGTGGCCGCACAGGAGGGACAGCGGCCTTGAGAGTGTTCAGAGCTGTTGCACAGCCATCCTGCACCGCGTTGGCCCTGGGATGGACTGCTGTCTAAGCTTTGTCATGCGGCTAGCAATGCACATTTACTATAGTCAGTCACCCTGGTACCAGCCGTGAAGGACGGGCAGGGACACACACACCACACCCCAGACACACACACACCCCCGACACACCACACCCCAGACACCACATCCCAGACACACACCACACCACACCCCCCCACACACACCTCAGACACCACACCCCCGACCCACACCACACCCCATACACACCCCCGACACACACCACACCCCACACACCCACCACAGCCCAGACACACCACACCCCAGACACACACCACACCCCCCAGACACACACCACACCCCCCACACACACCACACCCATCACACCCCCCACACACACACCCGACACACACCACGCCCCCCAACACACACACCCCACACACCACACCCATCACACCCCCCACACACACACCCGACACACACCACGCCCCCAACACACCACACCCGACACACACACCCCAACACACACCACACCCCAGACACACACCACACCCCAGACACACACCACACCCCAGACACACACCACACCCCACACACACCACACCCCACACACACCACACCCCACACACACCACACCCCACACACCACACACATACCACACCCCAGACACCACACACATCACACCCCCCCACACACACCTCAGACACCACACCCCCAACACACACCACACCCCAGACACACACACCCCCCACACACACACCCCAAACACACCCCGACACACACCACACCCCCCACACACACACCACACCCGACACACACCACACCCCAGACACACACCACACCCCAGACACATCCCACACACATCACACCCCACACACACACCCCAGACACACACCACACCCCAGACACATCCCACACACATCACACCCCACACACACACCCGACACACACCACACCCCAGACACACACCACACCCCAGACACACACCCCCCCCCACACACCACACCCCAAACACACCCCCACACACACACCACACCCCAGACACACACACACTACACCCCAGACACATCCCACACACATCACACCCCACACACACACCCCAGACACACACCACACCCCACACACACACCCCAGACACACACCACACCCCAGACACACACCACACCCCAGACACACATGCCACACCCCAGACACACACACCCCAACACACACCACACTCCAGACACACACCAACCCCACACACACCACACCCCAGACACACACACCGTCACACACCACACCCCACACACATGCCACAGCCCACCCCACATACGCACCCTACCCCAGACACACACCACACCCCACACACCACACCCCAGATACACACCACACCCCCCCCACACACACCTTATACACCCCAGACATAACACACACCCCACACCCCAGACATACACACCACACCCCCCCACACACACCTTATACACCCCAGACATAACACACACCCCACACCCCAGACATACACATACCCCTGACACACACCACACCCCACCCCAGATACCACACACCCCACACCCCGACATACCCCTGACACAGCTCACCCCAGATACACACCCTACCCCAGATACACACCATACCCCAGACACACAACACCCCCCCAACACACACCATCCCAGTCACATGCCACACATCCCAGACACACACCCCACACGCCACATCCCACACACACACGCCCGACACACCGCACCCCAGACACACACCACACCCACACACATGCCACACCCCACACATACACCCCACCCCACACACACATCACACCCCTCACAACCACACCCCACACACACACCACACCCCACAAACTACATAGACTATGCTAGCCACATACCACACACCAGACACACACACCACACATGAGCATGACGTATACCGCACACATGCCATGCACTGTACCCCCCCACACACATCCCAGACACACATACCACACACACTACACAGACCACACAGCAGACATACCACACACCAGCACCACACCCCCTCACACCACATGCCACACACACCACATGCCAGCATCACACACACACCATACCTCCTTCATACACACCACACACACAAACCAGACACACACCTACATACCACACACCACACACCAGCCACACACCACAAACACACCACACACACCACACGCCACGCATATATCAGATACACCACATACGTACAGATACACCACAATATACACCACACGACACATGTACCACAACACACACACACGACATAACACGCACACACATCACAAACACAATCATGTCCACCACACAACACACACACCATGTGCATGCACACAATAAATGCACAGCACAAAACATCACATACACCAAATCACACACACCACACACACATCAAACACCATACACACAGACCATGCATACTCACTGCACATGTGCACACATACCAACACACACCACACACACACACTGTACACACACCTAAAACCACCCCCATACACACCATACCAAACACAACCACTCACACATGCACCACACACAGCACAGCATACAACACACATCACACACACACCAATCATACCACTGTTACACACACACCACCACACATACTGCACACACCAAAGCACATACACACCACATAGACACATGCACGCTACCCACACCACACCAATCACATCCACACATACACAACCATACACACACACACACACATTGTTGACTTAGGATCGTTTCAACTCACAGTGGGTTTATTGGGATGCAGCCCCGTGGCAAGTGGAGCAGCATGTGTATTGACAAGGGGAGGAAAGCCGTCTGGAGCTGGTGAAGTAAAGTTAGCATGCAGCCGAGCTCTGCTCGTCTGAACTGATGAACCCAAGTTCCTCATGGATCACTCAGAATACAGATGGGTGAAAAAATAACCCCACCACCCGTGTGCCAGCACATAGCGCATCTGGCATACAAACGTAAGGATCAATAGCGATGAATGGCGATGGGTTGTGTCTACATGCAGATACAAATCATGCACTTGTACATTAGTGTGCACACACAGAAACAGATCGATATAATTTTTTAACCAAAGTGCAGTCTTTACCCTGTCAGGGCCCTGCCTTCACCTCTGCCAGGACTATCTTCCATGTCAAGTTTAGACCCGTGTCATTTTCAAAGCTAATAATGGTTCCCCCATACTTTAGGCAGCATTTAGATATTTGGATTTGGGATGGCCTTTTATGTTTTAACTACAGTGTTAGAAATCAGAGCCCTTGGAACCACTGGGATCAGAGGGCAGCAGCAGAAGGCGCCCTTGGTCCTCTTTGAGGGGCCCAGGGCTCTGGAGAGGGCCCCCGTTCCTAGCAGCCACAGTGGCCTGTTGGCACGCATGTGTGTGTTCCAGCTGCTCTGTGACATTTCCCTTTGTTTCAGACTCTTGAAAGGCCACGGCCGTCGTGGGAATTAGTTGACCTTGTGTGTTGGGCCACCCTTGCTGGACAGGACAAGGTGGTGCTATCAACTCCCTGTGCTCTGAGGTCCTTCGCATGTTAGATGAGGCAGCTTCACCAGAAACTATCCATGTCTCTTCTGTTATCTGGGATAATTCCACGTGCCTTTACAACACAGCTGTCTGGTTACCTGGGGTCTGGAAATGCCCTCGGTGCCTCAGTGGTGCCTTCCCACAGGCCCCCCATGGAGCCAGGCGATGCCTACAGATGCCTCAGTGGTACTTTCTCAGGTCCCTTTGCAGAGAAGAGGTTCAGGATTCCTGCCCACATTGATAAGGCGGCTTGGCCAGTAAGTGGCAGGCATGAACAGGTGCATTCCAGAAGCGCTGGGGCTGGTCCAGTGCCCTGAGTGGTCTAGAGCATACCAGAGTGAAACGTTAGGCTGCGTCGGCCTGGTGACTGTCAGGGAGATGAGGACTCAGAGAAGGGAGCTGTCAGAATTGCTACCTATGTGGCAGGGGTCTCACTCTCTCCTCCCTCCTCTTGGGGCCCCTGGCTACTCTGTGACTTCAACAGAGGACAGAAAGGATGACCAACAAGGCCTCAGGGCATACCCCCAGCTGCACTGTCCTTGTCCCCAGAAGGGTCCCCAGAGTCTGGGAGGGAGGAGGGGCCATGGCCAGGATTAGAAAAGACCGTGCCCCAAGGAGAGAGCACAGAGATGGGCCAGGGAAGCAGTGGGATCCTCGGGAAAAGAGGCTGGGAGCAGGTGTCCGGGTGAGGCCCGGGCAGCGGGTACAGGCAGGGACAAGCCAGGAGTCCCATCATGGAAGACATGATGGCCAGCGGCCAGCACTGTGTGCAGAGAATGGCCCCTCTGGGGATGTGCCCGCTGCCCCATTAGTTGCAGGAAGGCCACCTGGATGTGAGTTTGGGAGATGGGCTGGCCCCGAGGCAGCCAGCCCTGAGGTCAGAGTGGGCCACATGCATGGGGATGCCGGGAGGACACAGAGGAGTGCTGCAGGAGATGGCAGTGGGGGCACTTTCCAGGATGGGCCCGAGCAACTCAGTCACTGGGTGGATGTCTCACCACCCCTCCAGGCCTTCCTCAGGGCGAGGCCACTGCCCAGAGGGCACCTGGTTTGTCGCAGAGTAGAATCAGCTCCATATTTTGTAATCACATCCACGAAGCTCTGAAGCCATGGTGGTCCTGGCACCAGCTGGCTCCGTTAGAGGCTTGGGGTGGGAGTGAGCAGGTGGGAGGTGCCCCAGTGACAGGCTGAGTGCTGGAGCCCAGGCTGCCAACAGCCTCCCCAGACTCCTGAGTTGATGTAATAAACCCAGCCCTGGTGAATAAACCTGGCCCTTGCTTATACCAAGGTGATCAGTCTTCTCACGACAGTCCTAGCTGTAGGAGAAAGATCATTACCTACGGCATCTGCCACAGCAGTTAATTTGCCTTCAACTTAAGCTAGTTGCAGTGACAGGAAGGGCCAGGGGGAAATATCTGTCCTCAGGACCTCTACCCTAGATCCTTGTAAGCCACAACAACTTCCCTTCTTTGAGGGCGCGACCAGTGTCACCTGGCTCGCCACTGGGAAGAGCCAAGGCACATCCAGGTTGGTGGCTGCTGAGCCCCACAGCATCAGACCAGCCTCTTGTCCCCACCCCACAGAGGCCAAGGGGGTGATCTGGGAGTAGCACCCCAGCCTGGCCGCTCTCTTGAGGTAACAGGGTTGGATGGTTAGGGAGCTTGGAGCACTGGCCCAAGCAAGAAAACAGTGGTGTTTTCAGGAGGCCCTGCTGGGAGATGGAAGACAGCTCCCCACTGGGGGCCTAGGATTCCAGGAGCTCCCCAGCAGTCCTCCGTGGGACATACGTGGGTTTGCACCTGCTGCCCTGTCCCGCTGAGGGTGCGGTGCTGATGGGGTGGCCCTGCACACTGATGGTAACTCTCACTTTCCCTCTCTCTCATGCATTCAGAAAGAGATGGATAGTTTAAAAACGAATACATGGAACGTAAGTACTTCTTTAACATCTTTAATGTCTTATGATGATCAAGCATGTATTTAAATAGTATTTACTGATGCCTGTTAGCAGTGGTAAGCACGTGTCTGTTTCTGCTCACACCCCAAGAGTGTAGAGCTTTGAGGGTTTTGCAGTCAGTGGTCCCATGATGGGGCGTTGGGTGATTAATCCAATCCAGCTTAGGCCACCCAGATTCTTAGTCTCAAGGGCTTGGTCATGAGAACCTTCCAGAGGCTCCTGTGACTCAGTGACTCCAGTCCCCTGGGTGGTTCTTGGTGCAGGTCACATGAGGGAGGAGACCGGGCTTTTATAGAACTCACTTCACTGTCTGTTCAAAGAAAAGTGTTACTTGATCATAACAGCTCAAAAAAATCTGTTTCTTAAAATGAGATTTTACCTGGATGCCCATCAGCTGGGAAAGGGAATATCTATTCCCCAGTTGATGGGCACCTAGATGTACATAGAGACATATGTTTGTACATCTATGTAATATGTACTTATATTTGTAGATAGATACATGGAATTATCTGTGGCCAGAGTCCAAAACATTTTGAGTGGGAAAAAACAAATTATAGAGTGTTAAGTTTTGTTTTTTTTTAAATTCTGCACAAAAACCAAACCTGTTCACAAGGGCTTGTCCACCAGGCCAGGGCCAGATGGGCCGCCAGGCAAAACAGTTTTGGAGCACCTTCTGAATTTCCTTGAGTTTACAGAATGTTTCCTTCAAAGTAACACTTTTATAAAAAATTATTATTATAAAAGCAATGCTTGTTTGTTATAAGTTTGGAAACTCCAGGGAAGTATAAAGAAAAAATTTAAACAATCCCAAATTTAACCATCCAGAGGTAGTTACCACCAGCATCCCAGCCATTTTTGGGCCATGACTATCTACGTTCACACATGTATACATGGGTGTGTACATATATGCACACATTCCTAGATATTGTTTCACTTATTTTTCTGTGTTGCTGAATATTCTTCGATGGCACTTCGAATGAGTGACTTGTGGCCCCCTTCTTGGACATTTCCCAACTCCTCACTGATAGAAACAGGGCTTCACTGGGCCCATCCTTGCCTCGGGACTCATTCCTAGGACTGCCCAGCTAAAGGGTCTGAGCTTGGTCAAGTCCTTGGGAGGAGCATTCTCTGGTGATCCTGGACAGTGGGGAATTGTTGACCAAGAGACCGGACAAAGATGAGCAGATGCCACAGTCAGTAAAGCAGGGAAAATGCATTACTAAAGTCAGCTTCATTAAACTGGCGATCTCTTCTTTTCAAAAGTCCAGCATGTGCCACAGAAATGGAAAGCTCTCTGGCCACTACTGTCCTGCCCAGGGAGGGGAGCGTGGGTCCACCCACACCATTTAATACCTGTAACTGGATGCACCTCTGCCCCTACACCTGAGAACAAGGCCAGTTTTTGTGTGTGCAGGTACTTTGGACTCTTTTGGCTCTGGAATTTGTTTTACCTGCTCAGTGTTCTGAACTCCTTCCTTTTCACTACTAAGCATTCTCCATGAAGCCACACTTCATTTTGTCATTGTGAGGTTGATGGACATCTAGGGCAAATCTAACTTCTAAAGACCAATTCTTACGAGGTGTCATGGTCAAGCAGAGGCCATGGCCGGCACTGGTCTAGGTGGCCCATGGCCCATTTGGGGGCCTTGGTGGGCCTCGAGGAAGGGCAGGTGCTGGTCAGGGAGCCGGGTCGCTAGGCAGCAGGTGGGTGTCACCCCAGTCCACGCTGCTGGGGTGCCTGGCCTGATGCAGGCTGTGCCTGAGGGAGACAGAAGCAGCAGAGTAGGCTGGCCGGCCTCCCCAGCCCCACCACAAGCAGGAGCTTCAGAGACAGAAGGAGCACCTGCACCCCCTCACCTGCCCTCCAGGGCCTGGCCTGGCCCTCCCAGCTCAACTCCAGGGTCTGTACGCTCTGGGGCTGGAGCTTAGTGGGACTGTGGCCCCCCTCAGCCCTTTCTGCATTTGAGTGGAAGCCAGTGTGCGAAGCAGATCAAAATGGATGTGCTTGTTTTTCCTTCAGTAAGAACAGGGAGTTGAGCCTGTCCCAACATGGCCAGCAGCCCCTGGAGGGCCAACAGACTTCACGAGCAAGGAAGGCCGGGAGGTGACCTGCTGACCAGAACTTACTTGTGCCCCTCCCCCCCGCCCAAAACCCCCAACATTCTGGTTTTCACAGCCCCACCCCAGCCACCTGGAACAAATAGTGTCTAGGAGTAGCCCTCAGGGTTGGCCGCGCAGACTTCTTGCCCTGGGATGAGGCTGGCCTCCCCAGGCGAGGCAGCCTGGGCCACAGGGGAACGTCTCTGCCTCGCCCACCCTCCTGATCTCTCCATCAGACAAGCTGAGGCCAGCCAGGCTCCACCCTGGCAGGTTGCAACAGATGGTCTGAGTGTGTGTGAAGTAACTGGCCTCTCTACTTTCTTCAATAAGTAATTAAGATCAAAAGCCCAGAGAAAAACAACAGAGGTTTGCGGCAGAAGTGGCCAATGTCGGGCCCAGAGTCCATGCTCAAGGCTGGAAGCCCATCCTGGATGTGCTGCACTCGGCAGTCCTAGTGTAATTCTGCAGGGCCTGGCCCCTGCCAGGGTCTGAGCTCTCCAGCCTGTGGCATCTACTCCCCTCCAAGCCCACCCCAGTGTCTCAATTGGAGAGACAGGCCCTCATGGTCCCCACTCTGGCCCAGCCCCCTCTGCACACAGCTGGCCGAGCTCTGGGCCTCTCCATGCTGTGGCCCTGGTGATGGCAGAGCCTTGGGATGTCTCTGTCCATGTGGTCACAGGACATGTGTGTGGCAGCAGGGCCATGGTGGGGTGGGATGCTGTTCCAAGGCCCAGAACCATTCTGTAAGAAACCAGCACAGCGCTGCAAGAAAGGGGGTCCTAGGGGACACAGGCCACACAGGTGTGCTTTGAAAAATGGCAATTAAGGTCAAAGAGCAGGAAGTCCACAGGACGGGCCAAGGCCAAGGCTCCCGCTGGCCATGGGGAAGCCACCTCCAGGGCAGTCCCAGGGACTGAATTGGAAGTTGTCCCAAGTCACTTCAGGTCCAACTGGGACAGCAGAGGTAACCCCCCTGCACCCTCATGGGGCAGCTTCTTTGGGTCCTAAATGTGGACTCAGAGGTGGAAACGGTCTGTGTCCCCAG
Seq C2 exon
GTCCTGCAGACATTCGCTTTGTCTGGGAGAAGAATGGGCGAGCTCTGGAGACCTGTGTCCCTGTGCAGACCCATGCACTGCCCGATGGCAGGGCCCATGCACTCAGCTGGCTGCAGGACGCCATCAGGGAAAGCGCTGAGTATCGCTGCTCTGTCCTCTCCTCAGCAGGGAACAAGACTTCGAAGGTGCAGGTTGCTGTGATGAGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187764-SEMA4D:NM_001142287:18
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.284 A=NA C2=0.073
Domain overlap (PFAM):
C1:
PF138951=Ig_2=PU(26.4=32.4)
A:
NA
C2:
PF0765410=C1-set=WD(100=78.3)
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)