MmuINT1013372 @ mm10
Intron Retention
Gene
ENSMUSG00000051107 | Gm15440
Description
predicted gene 15440 [Source:MGI Symbol;Acc:MGI:3642353]
Coordinates
chr13:51691289-51701041:-
Coord C1 exon
chr13:51700837-51701041
Coord A exon
chr13:51691499-51700836
Coord C2 exon
chr13:51691289-51691498
Length
9338 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GATAGTCCATGTGCCCGCAGGTC
3' ss Score
8.72
Exon sequences
Seq C1 exon
GCCTCATCTCCTAAGTCCTTCCCTCCTCCTGGCTCCTCTCTATCCTGTCTGGGCCCTGACTCATCTTCTCCCAGAAGCCCTCGGCCGGCCTTGGCCTCGGGGCCCAACAGCCGTAAGCAGGTCACCTTACTGCCACCCTTCTTGAGTGACCAGGCGCAGAAGGTGCAGGCGCTGGGGACCTTCTACCTCTTCTGCCAGGCCACAG
Seq A exon
GTGAGTTGAGGGGCCTGAGTGTCCATGGCTGTCCCCTCGCTCTGCCCTTGCTCCTAGCTGTGCCTGAGGTTCAGCTGTCTGTGCTGATCCCGGGATCAACTGTCAACCGTGCAACGCTGTTGCTAGGGCTGCCGAAGGGGTCATCCAGCCTCTCGCCGTAAAGGTACAGGTGTTGGGTCTTCTGAGCATGTAGGCTGCTGTGCCCAATGTTGTATGTCAGAAAACTGGACCTACAGGGCAGCAGAGAACCAGATGAGGCCACGATTTGCTAACCTGGGTTAGGTAGGGAATTCAAGGCCAACCCCAGGCAACTTATGAGAACCCTGTCTTGGAGTTTTAAAATAGGAATTAGGATACATCCAGTGGTAGAATGTGTGACTAATGTGTACAAGGTCCCAGCCACAGCATAAATAAATACATAAATGCGTGAAGTCCATAAGGTGGAGGTTTTCTCCCTCTGCTGGAGACTATCACATAAGGACATGGACTCTTGAAAGATGGTAGTTTACCCAAACCATTCTTTAGCTCAGAGATACCCATAGCCCCATCTTTCCCTGTGGGCTTTGGCCTCTGCACAGAAGTGAGGAATAGAGTTGATTTCAAGACAAAGCAAATCCGGTTTATCTTAAAATTGCTTTTTAATTGTCGAAGCTATGGAGATCTTGAAAGTGCTATGTGTTTTGTTAAATTAGCTCTAGGATCCCAGGGGCCTGTGTTGTCTGCTGTGAATGCAACATGCCGTTGGCAGCTGGAGGCCCCGTGGAGGCTGTGGGAGGTGGGCAGAGGTTGCTGCAGACCTACGTACCCTGACATGTCATCAGTGAATACATGGGCCTTGATGGCCCTTTTGAGTTGCTGTCTTAACTCTGGCTGCCCAGGCTGCTGACCCTGGACACCTGAGCTTCAGCCCCCCTCTCCAGGTCCCTGGGTCTCCTGGTGTGTGTCACGGTGCCCAGTGATTCCCATTTTGTGCTTGCTGCTGTGGACCAAGCCTTCATGTCGACACCTGTTCTTGTTCCTCAGTAAGATATTTTAAGATAGATCATTTATTTATGCATGTGTACAAATCTGTGAGCGTATAAAGGGGCAGAAGAGACGCCTTGAAGCCAGAGTCACACATGATTGTACATCACCTGGTGTAGATGCTGAGGACTGAACTTGGGTTCAACTTGGAACCTGCGAGAGAAGCAGGTGCTCTCAACTGCTGAGCCATCTCAGCACGTCTCTAAGGGGCAAGCCATTACATTTAGGGGAGTGTTTTCCAGTCCCCGGTATTATTAGCAAGGCTTTCACAGGTATGGGTCCTCCGGTGTGGGAGAGGGTGAATGACTGGGGCCTTCCTTAAGGAAGATAAGACTTCATTGTTAGATGCATAGAAACTACAACATCGGGCATTTCAACAAGGGGGAATTCGAAGCCGGGAGTTGTTTGCTAAGGTGATGGGGAACCTAGGAGTGAGACAGGAAGGTGGGCTTCTCCAAAGACTGCTACAGGAAGCCACCAGCATGGGCAGAAGCAAAATAAAACCTCACTCACACTTGCCAGGCCTCTGAGGTTGGGCATGACCTGCAAGGGTAGCCTTGCCGGCAATGTTCCTACCGCCGCACTCCTCAGGTACCACGAGAGACAGGAGATGCGCTTTTTGAACTTTTTAGTGACCTAAGGGAACACTGGAAGCCAGGGACTGAGGAGCCATGGCTGGGGACTGTGGGGGCCGGAAGTGTGCAGGGTGTGAGTGGAAACTGAAGTGGAAGAGTGAGTTCCTCTCATGCCCCTCAGAGCGGACTGAGCCCAGGCTGGGGAGACAGCTCACTGATTAAAGTCCTTACTGTGGGAGTGTAAGGACTGGGGTTCTCATCCCCAGACCCCCACCTAAGTGCTGGGTAGGCTTGGTGACCCACCTGTAATTCCATCTTTAGAAAGTGGTGATGGAATCCCCAGAGCATGCTAGCTGGCAGGATGAGCCATTTAGCAGTGCTCTGGGTTTGATTGACAGAACCTGTCACCTCAAGCCTTTGCATGCATCTACACACACACACACACACACACGCACGCACGCACGCACGCACGCACGCACGCACGCACGCACGCACCAAGTCTCTGTCTTGAGCAGACATGGGACCAAACCCTTACTCTCCCTTACCTACTTTCTCCTGTCCTTTTTTCCACAAACATTTGACCACACCCGGGGCCTGTCTTTTCAGTCCTGTCCTCCACCAAGACAAGGCACTTTAGGGAAAGGCACCGCCAGCCTGGTGATGGCTGGGTGGGCTTTGGTGGTGTGAACATGCCAGGGCCTCTGCTATCTTTGAGCAGGTGGCAGGTTGGGTCGGAGTTGGCAGACAATCTTATCTGAAGCAGAGGCCATGTGGTTTTGAACTCAACTCCCTGTAACCTTTCTACAAAAAGCAGTGTATGTCTTTGAGGTCTGCTGAGGAGGCCAAAGCAGCTGTCCCAGGTGAGACCCCAGTTGGCTCTCCTAGCCCAATGACATGGGCAGGGCAGGGCTAGGTGGGCAGAGCAAGTTGGGAGCCTTGACCTGCGTTTTTCTCTCTCCTAAAACAGCTGTTTGTATGATTTATGTGAGTGGCTTGGGGCTAGCTGATTAAAGGCCTAGTGCGCTGTTTTTAGAACACAAGACTTAAAGAGAGGGTGAACAGGGACTCTTCAGTCCCTTGGCATGTGTCCTGGTGTCCGCTCTGGCTCTGCTGGTGACTCTGAGCTATCTTGGGGGAGCCTCACCCCTCTAGAGGGTTGATTAGAGGTCAGATAGACAGCAAGGCTTGTACTCAGGACTATTCTGCCCACTCCTGCTTCCACCCAGGACCTCCATGTCCTCTGGATTGGATGAGTGTTTTCCCAGTGTATGAGGCAATTCAGACGCCCTGTTCTGCATACCCAAGTGAGATGACCAGGGAAGACATGAAAGCTGCCCCAAGCATGGCTGTGGGGAAGGTCAGGCTGCCTACAGCCTAGAGCTTGCAGGAACTCCCGTTTAGTTCCAGGAAAGGCAGCAGGATCCGGCACTGACTTTTCCTCCAGTCTTTGTGCCCGGGTCTGCAGCCCAGCACTGAGGTCCGGCCATACCCAGCCAGGTGGGTGGAGGGCTGGAGCCGCTGCACTGTCTGACCTTACACTGCAGTTGCTTCCCCGTGTGCTGATATCACTGGGAGGTGCATGTTTATTCTGTCCTGCTGCCAGCTGCCAAAGGTTGGCATATGTACAGCACATGCCATGCCAACACACACCACACTGTGACATACACTACACCACACCACACATACCACATATACCAGGCACCACACATAACTCCCACCACATACTCTCCACACATAGCCCCCAACACCACACATATAATTACCCACTGCACACACAACACATTTATCCCACATTTCACATAACCCCCAGTACCACATGCCACACGTACCACATCTTACATGCCACACACCATGCACCACATATCACACCATACATGCTTCCTTTGTGTACCACATATATAACATCACACATACCACATACACACTCCATACCATATATCATGCTACACATACATGTACACACTACGTACTCAGTCCATAAACACTGCACACATCACACAAACCCCATGTGTAGCACACAGCCACACCACCACCACATCTCACCTATACCAAATACCTACATCACAAGTCACCCACACTACAAATTGCCCACACCGTAAAAGTACCACCCAATGCCATGTGCGCACAAACCCTACAAACTTAAGACACTTACCTCAGGTGCTTTACGAACAGCATAAGCAAATTGCTTTTACCAAGCGGGGTTCCTAAGCAAGCACCTGTACATTTTTGGGTCCCCTCATTTAGTCCCTGTTTGGGGTATGGATTCGGGGGGCCCTAAGAGAGCTGAGGAATTGGGGTAGTGGGGACAATGAAAGCTGCTTCCTTTCCGGGCCTCCTGGGTTCTGGGCAGCTTCAGGATCTGGGCTCAAAGAAACTTTTGGGGCTCCTTTCTCCTAATGGGGGCCTCTGTGGTGGCCAGGTGGGTGGGGCTGGGAAAAGGGAGTCCCTGGTACCTCCCTTTCTCAAGGAGGGCAGGGGCACACCAGAAAGTGGTTTCCCATATCCATGACCTTTAAGAGTGTCCTCAACCATTGGGGCACTTCCTCATTCTGGTTCTTCAGGGGGTGGGTGTGTTAAAGATCACATGACCCTTATAGTGAGATGCAGAACTGGGTGGGGTGTGCCTAGGGTTCCTGCTGCTCCAATTTAGGAATCCATCATAAATGCAGACAATGATGTCTTGAGAGCATCAGCCTCATCCTTGAGCAGTATCTTTAGTCCCCCCAGAGTCCAGAGCCCAGCTCCCTCATTCCCAGGGCCTGTTTCAGTTCACAGTCCTAAGAAGCCACTGATGGCTACATCGTCATCTCTCAAGACTTCCAGGTGCAGTCCCGATTACCTGCATGATGAGGTGCCTGGGGGCAGAGACAGAGAAAGGGCCTCAAGCTTAGCCTCCCCTCACAGGTAACAGACATGCTTGTACTTGGTCTAAATTCCAGGCTGGCCAGGGCCAAATAAGATGCCATCTGAACTAGCAGCTGTCTGGACTAATGGCATGTGACTGATGGGGGAACTCATGAAATCTGAGGCTACGGTATGAGAGAAGTTTCTAGAAGTTGAGGGAAGCTTTGAAAGAGCCCTTGTGGCCAGAGTGCAGACTTGTGGGGACTGTGCAGCCCATGGGGATAGGTGGGTCAGAATCCTTCCCAGGAGGCTTAGTAGTCACTAACTTGATGTCAGGAAGAGCCCAGCCCGTGTGCATGACTAAATACCTGACAAAAGCGAGTCAAGGGGAGGTTTTAATTATGGTTCACAGTCTGAGTCTATGAGGAATGCAGCAGGGGCATGCACCTATAGTCAGGAAGCAGTGTTGCTCAGTTTGTGTTTCAACATCCCCTCCTCTGGGGGCATCACTGTGTAGCCTTGGCTGGCCTGGAATTTTCTAGACTACCACGTCTTCCAGTTCCCAGAAATCCTCCTGACTCTGCTTCCTGAATGCTAGGATTAACGGTGTGTGCCAGCCACCATGGCCAACCTCACAGGCATGCCTAGAGGCACATCTCCTAGGTGATTTTAGAGTGTCTTGAGCTGACAATATCTACCATCACATGAAGGTATTTGAGGCAGGTGGCACAAGACAGAAACAACTGTTAGCTTCAGTGAACCCCTAGCTAGGACATGGGTGAAAGAACTCTGGGAAACCTGTGGATGGGACGTGCCTGGGCAACTGTGATGCATAGGTCCAGTTCTGGGTCCGCCACCCAGTGCCAGATGGCACAGTACTGAGGGGGTGGCACCGTCCACTGCTTTTAATGCTCCTTCTCCCTCTCTTTGATTTCTGCACTCAGAAGGAATTGGATAGTTAAAGAACCAACAGAGAGTAAGTACCTCTTCACCTCTCTCATGTTTTACAGTGATGCCACATTTAAGTTTACAGGTGCTGTGGTGTGGGGTTTGTGGCCAATGTGACCTACATGTTTTCACCCCCCACCACAAACTTGATCTACAAACAAACAACAAAAGCCCGGAGTTAGTGTTTCATGTTCATTCCTTGGTTGTAATACCTCAAGAGTTAGTTGTTCCAGTTGGATTGTAGATTGATACCCAACTGCAGAGGAATGGCTAAAACAATATGGTTCCATGAAAGGCACTGAGTTGCAAAGGAAATGCTTGGCCCTAAGATCTACAGGTAACACCCAAGATCCTACCAGCTCTGAATCCAAATCCACAAAGCTGCTCCTGTCCTGGATCTACACAGGCTCTGTTGTGTCATTGTTCCTTAAACTGTTTCACAGCTGTTTAAGTAGTGTCGGCATAGTATTAAGTACTGTAAGAAATGTAGAAATGATTCCAAGTCTCCAGGAGGAGGTACATGTAGGTTTTCTGCAAACATGTCATTTGATGTCCTCAGGGATCCCCTGCAGATACTAAGGGATGACTCCAGTTGTGCTCCCCAGTTGATGGACATCTGTATACAGATGTGTGTGCGTGCATGTGGATGCGTTCATATACACCTAAATACATGGAGTTGTCGGCGGCTAGAATTGAAAACACTTGAGTAGAAAGCAAATTTAAGTCCGCAGGGCTTGTCCACTAGTCTGCAGCCAGGTGGGTAGGCACAGGTGCTTCCGGAACACGAGACTGGCATGTTCCTGTCTTATGTATGTTTGTTTACTTTTTAATTTTTTAAGTTAATTTATTTTAGAGACAGAACCTTAGCATGGATCTCTGGCTAGCCTGGAGTTATGAGACTTACTCTATAGCTCAGGTTGGCCTTGAACTTATGGTGGTTAACCCTCTGTCTCTGCCTGCTGAGTACCGGGACTACAGGTGTGCTTCATCGTGCCCACTCAATTCTGTCTCAGTGGCATTTTTCAATTATAAAAGTAACACTTATTTATATTTGTTATTCATAAGCTCTTGGAAATTTATTTTTAAAAATTCAAGGGTCTGGAGAGATGCATGGGTAGTTAAGAGCACTTGTTCTTGGAAAGGACATGGGTTTGATTCCCAGCACCCGAATTGTGGCTCAGGATCCCTGCAGCTCCAGTTCCAGAGCATGCCATGCTGCCTCCTCATGCAGGTGGTGCATTGGTAACAAGCCAGCAAAACACCCATACACATACAATAAAACCCATCCCCAGGCTGGGAGGTATTTTAGTGGACAAAGCACATGCTGTGCGGCATGTACGTAATGCCTGGCAGGCAGTTGCAGTAGCCTACCTATAATCCCAGCACTCCCAAGGTGGGAAAGGGAGATCCTTGGAGCATGCTGGCTAGCCAGTCTGGCTGATTCAATGAGCTCATAGTATACTTGAGACCCTGCTTCAATATATATATATATACACAGTGCCAAGCAATAGGCGAAGACACATGGTTGACATCCATCTCCAAGCCCCACATGTATGAGTTGCATTCTGTTAACCCTCTGGAGCCTCACCAAGCACTGTATGACCTACATGTTTTTCAGTTTGCTTTTTTCTGAAATCAGTTTCTCTGAGAGGGTTCTCCTGACTGTCAGTCACTGTAGTGGCTTCCTACCATTTGTATGTGTCGTCGTCGTCCCCACCCCCGCCCCCCGGACATTTCCTGATTGTTACTAACAGAAACAAGCCTGTGGCCCTCCAGTTGCATTACCGCTTTGGAGCCGTCCCTGGGATGGTCCAGTTGTATTTCTACTTGATCCAGTGTGAGAGGAAAGCCTGGGACAACAGCACAGGGGGTCATTGATGAGGGAACCAGATGATGATGAATAGAGGGTTGGTGAAGTGAGGAGACTCCAGGCCCAAAGTTATAAACTAAAAATCTCTTCAAAAGTCCAGTCTGTGGGGCTGGCATGCTGTTGGTAGAATGGTCACTTAGTATGCATGAAGTCCTAGGTTAGATCCTCAGTACTCCATCAACTTGTTCAGGGGTGCAGGCCTAGAACCCCAGCACGTGGGAGGTGAAGGCAGGAGGATCACAAGCGCAAGGTCATCTTTGGCTACATAAAGTTCAAGGATAGCTTGGGCTACACTGAGGTCCTGTCTTAGAAAAGAAAAAATGCAACCTGTCACCTGTAACTGAGTAGTGCTAACTCCCTGCCTGGTACCATTCCTTCCCCAGGGCAAGTTCTCCCACCCTTGGCCACCCACACACCCTGGCATCATGGCGGGGACAATGCCAGGTGATTTTAAGAGTTCCCAGGTTCTGCCTTGGTGGTTGTTATTTGTTGTTATTTTTTGTTGTTTTTCCTGCTCAGTGTTTTGAGCCCAGGTGGAGATTGCTATTTCTTTTCTCCCCGTTTGAATGTCTCCCATCAAGCGTGCGTGTGTGCGTGTGTGTGTGTGTGTAGATGGCATGTGAAGGTGGCAGGACCTGGCTGGCTGGTCCTTCCTGTCCAGCTCAGCTTGGTACATCACATACCTGGTAACAGTAGCTGACAAAATGTAGCACCACGAGGCTGGTTTAAACCATTGGGCCATCTTCAGCCAAGCCCCAGGTAGGGCCAGGGAGTGAACCATTTATGAGTGTAGCTGCTTTGTTTTGCCTTCTCCTTGGTGGATGGAGGGCAGCCTGCCCTTGCATGGCCTGAAGCTCTGGGGATCTAGGGTGAAGTCTGAGACCCAGACTATACATACCCATAAGTCAGCACTAACAGGGAAGTGACCTGTTGCCATCACAGCTGGTTTTGGCACTGTGACCAGAACTGAACCTTTCTTTATGATTCCCTAGAAATGACAACCCTCAGACACTCTATAAGGAATCAAGGGTCTGAGGTTAGCCCAGCCTCTTGCTGGCTTGCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGAGGGTGGGGGTATTCTGTTTTGGGTCACAGACCTTCTCTTCTATTGGATGCCCTGCCTTACCCGCTTGCCAAGACCTTGTGTGTCAGACAAGTTGAAGTCACCCATGGTGCCCCCTTGGATGGGGTGTGATGGTAATACTTTGAACAGTGTGGTAGAAACAGGTAGCCTTAGTCTTGAAGACAGTCTCATTATGTAGAGAGACCTCTCTCTTGAACTCACAGAAATCCACCTGCCTCTGCCTCCTGAGTGTTGGTATTAAAGGTGTGTGCCACCACACTTGGCTAGTCTTTATCTTTTCAATAATTACTGTTTTAAAAAAGAAAAAACAAGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCCGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACAAGATCTGACGCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTATACTTACATATAATAAATAAATAAATCTTAAAAAAAAAAAAAAGAAAAAAAAAAAAAGAAAAAACAAACCTAAGAACCAGGCATGGTGAGGTTATACATACATATAACCCTGACATTTGGAAGGTGGAGCCAGGCTTCTCAGGAGTTCAAAGTCATGTGGTTCCATGCGGCTCAAAAACACCCACAGAAAGGGTACCACATCTCCTGATCCTCAGTGGGTACTTCACTGGGGGGAGGGGTGCACAGTGCGACAAGGAGCCAGAGGTTGAGGCCATGCAAGTGTGCTAGAGGTCTGGTGGAGAGGTGAGGTCTAAAGGTGGGTGTGGTGCTTTGTGGCTTAGCTCTTCCAGGAGGGACCTGGTACAGAGCTGGAAGCTGTCCCAGGTCAGTGCTATTTGGGACCAGGTCTACTTGGGGCCTTCATTTGCCCAGCTCCCTTGAGTCTTGAGTGGAGATGTGGAGATAGTCCATGTGCCCGCAG
Seq C2 exon
GTCCAGCAGATATCCGATTCATTTGGGAGAAGAACAGGCATGCCCTGGAGACGTGTGTACCTATGCAGACCCATGCACTGCCCGATGGCAGGGCCCATGCCCTCAGCTGGCTTCGGGACACCATCCAAGAAACCACCGAATACAGCTGCTCTGTCCTCTCCTCAGCAGGAAACCAGACTTCAAAGGTTCACATCACTGTGATGAGACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051107:ENSMUST00000110042:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.160
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF059386=Self-incomp_S1=PU(59.0=98.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types