GgaEX1051652 @ galGal4
Exon Skipping
Gene
ENSGALG00000010697 | SEMA4D
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D [Source:HGNC Symbol;Acc:HGNC:10732]
Coordinates
chrZ:43448664-43456537:-
Coord C1 exon
chrZ:43456356-43456537
Coord A exon
chrZ:43452007-43452028
Coord C2 exon
chrZ:43448664-43448867
Length
22 bp
Sequences
Splice sites
3' ss Seq
ATTTTCTTAAATCTTTCAAGCAT
3' ss Score
5.36
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
ATAGATCCTGTCCACTCCATGCTGTCCAGAGGCCTGACTCCTTCCCTTAGCTGTTAGAAGCTTTCCTTACCTGTTCTGTAGCTTTTTGCTCTCATTCAAATAACCTTCATATGTGAAGATAACAAGTTCTGCAAAATTGGCGTTCTTCTTTAAAGAAGTCATCTTTCTGCACTGGCACTGAG
Seq A exon
CATTCTTAAGGTGGATGGCAAT
Seq C2 exon
GTCCAGATGACTCCCATTTTGTCTGGAAGAAGAATGGACAGGAAATGAAGGCATGCATCACTGAGCAGGCTCACAGGCTGTTTGATGGCAGAGTGCATGTCTTAAGTTGGGTGAAAGATTCAGTATCAGGAAACACAAAATATAAATGTTCATTCATCTCAAGGATTGGGAACACAACATCAGAAGTGCTCATCAAAGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010697-'20-28,'20-27,21-28
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.000 C2=0.014
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF138951=Ig_2=PD(72.5=95.7)
Main Inclusion Isoform:
ENSGALT00000037939fB11781
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGTCATCTTTCTGCACTGGC
R:
ATCAAACAGCCTGTGAGCCTG
Band lengths:
115-137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]