RnoEX0079333 @ rn6
Exon Skipping
Gene
ENSRNOG00000013679 | Sema4d
Description
semaphorin 4D [Source:RGD Symbol;Acc:1310554]
Coordinates
chr17:13538711-13548990:+
Coord C1 exon
chr17:13538711-13538914
Coord A exon
chr17:13544688-13544719
Coord C2 exon
chr17:13548781-13548990
Length
32 bp
Sequences
Splice sites
3' ss Seq
TCTTTGATTCCCGCAATCAGAAG
3' ss Score
4.49
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
CCTCATCTCCTAAGTCCTTCCCTCCTCCTGGCTCCTCTCTGTCCTGTCTGGGCCCTGACTCATCTTCTCCCAGAAGCCCTTGGTCGGCCTTGGCCTCAGGGCCCAACAGCCGTAAGCAGGTCGCCTTGCTGCCACCCTTCTTGAGTGACCAGGCACAGCGGGTGCAGGCGCTGGGGACCTTCTACCTCTTCTGCCAGGCCACAG
Seq A exon
AAGGAACTGGATAGTTAAAGAACCAACAGAGA
Seq C2 exon
GTCCAGCAGACATCCGCTTCATCTGGGAGAAGAACAGGCGTGTCCTGGAGACATGTGTACCTATGCAGACCCATGCGCTGCCTGATGGCAGGGCCCATGCCCTCAGCTGGCTTCGGGACACCATCCAAGAAACCACGGAATACAGCTGCTCTGTCCTCTCCTCAGCAGGGAACCAGACCTCAAAGGTTCACGTCACTGTGATGAGACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013679_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.237 A=0.000 C2=0.028
Domain overlap (PFAM):
C1:
PF138951=Ig_2=PU(26.4=34.8)
A:
NO
C2:
PF138951=Ig_2=PD(72.5=93.0)
Main Inclusion Isoform:
ENSRNOT00000076794fB13116
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCACCCTTCTTGAGTGAC
R:
ACGCCTGTTCTTCTCCCAGAT
Band lengths:
117-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]