HsaEX1036467 @ hg38
Exon Skipping
Gene
ENSG00000187764 | SEMA4D
Description
semaphorin 4D [Source:HGNC Symbol;Acc:HGNC:10732]
Coordinates
chr9:89363741-89377051:-
Coord C1 exon
chr9:89376833-89377051
Coord A exon
chr9:89367123-89367158
Coord C2 exon
chr9:89363741-89363950
Length
36 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTCTCATGCATTCAGAAA
3' ss Score
7.73
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
CCTCGTCTCCTAAGCCCCTCCCTCCTCCTGGCTCCTCTTCCCTGTCCTGTCTGGGCCATGTGGGGGACAGGAGGCTTTCCTCTCCCTGGACCCCCTGGCCAGCCTCGGGTGCGGGGCCCGACAGCAGCTCGAGGGTCTCCTTGCTGCCGCCCTTCCTGAGTGACCAGGCACAGCACGTGCACGCCCTGGGGAACTTCTACCTCTTCTGCCAGGCCACAG
Seq A exon
AAAGAGATGGATAGTTTAAAAACGAATACATGGAAC
Seq C2 exon
GTCCTGCAGACATTCGCTTTGTCTGGGAGAAGAATGGGCGAGCTCTGGAGACCTGTGTCCCTGTGCAGACCCATGCACTGCCCGATGGCAGGGCCCATGCACTCAGCTGGCTGCAGGACGCCATCAGGGAAAGCGCTGAGTATCGCTGCTCTGTCCTCTCCTCAGCAGGGAACAAGACTTCGAAGGTGCAGGTTGCTGTGATGAGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187764_MULTIEX3-8/9=6-C2
Average complexity
C1
Mappability confidence:
82%=82=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.275 A=0.000 C2=0.079
Domain overlap (PFAM):
C1:
PF138951=Ig_2=PU(26.4=32.4)
A:
NO
C2:
PF0765410=C1-set=WD(100=78.3)
Main Inclusion Isoform:
ENST00000420987fB25425
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGGGGAACTTCTACCTCT
R:
CAGTGCATGGGTCTGCACAG
Band lengths:
116-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains