HsaEX0057106 @ hg38
Exon Skipping
Gene
ENSG00000187764 | SEMA4D
Description
semaphorin 4D [Source:HGNC Symbol;Acc:HGNC:10732]
Coordinates
chr9:89363741-89381346:-
Coord C1 exon
chr9:89381174-89381346
Coord A exon
chr9:89381055-89381098
Coord C2 exon
chr9:89363741-89363950
Length
44 bp
Sequences
Splice sites
3' ss Seq
ACGTGCCGGTTGTTTTGCAGGGG
3' ss Score
9.29
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GGCAACAGGTTTGTCTATGCTGGCTCTAACTCGGGCGTGGTCCAGGCCCCGCTGGCCTTCTGTGGGAAGCACGGCACCTGCGAGGACTGTGTGCTGGCGCGGGACCCCTACTGCGCCTGGAGCCCGCCCACAGCGACCTGCGTGGCTCTGCACCAGACCGAGAGCCCCAGCAG
Seq A exon
GGGTTTGATTCAGGAGATGAGCGGCGATGCTTCTGTGTGCCCGG
Seq C2 exon
GTCCTGCAGACATTCGCTTTGTCTGGGAGAAGAATGGGCGAGCTCTGGAGACCTGTGTCCCTGTGCAGACCCATGCACTGCCCGATGGCAGGGCCCATGCACTCAGCTGGCTGCAGGACGCCATCAGGGAAAGCGCTGAGTATCGCTGCTCTGTCCTCTCCTCAGCAGGGAACAAGACTTCGAAGGTGCAGGTTGCTGTGATGAGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187764_MULTIEX3-4/9=3-C2
Average complexity
C3
Mappability confidence:
76%=86=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=0.245 C2=0.079
Domain overlap (PFAM):
C1:
PF0143720=PSI=PU(71.7=65.5)
A:
PF0143720=PSI=PD(26.4=87.5)
C2:
PF0765410=C1-set=WD(100=78.3)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGAGGACTGTGTGCTG
R:
CAGAGCTCGCCCATTCTTCTC
Band lengths:
143-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development