GgaEX0015965 @ galGal3
Exon Skipping
Gene
ENSGALG00000010697 | SEMA4D
Description
NA
Coordinates
chrZ:42877877-42879753:-
Coord C1 exon
chrZ:42879581-42879753
Coord A exon
chrZ:42879304-42879347
Coord C2 exon
chrZ:42877877-42878203
Length
44 bp
Sequences
Splice sites
3' ss Seq
ACTTGCACTATTTTTTACAGGAA
3' ss Score
8.43
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
AGCAGAAGATACCTCTACGCTGGTTCAAATTCTGGTGTGGTTCAGTCTCCTGTGGCATTCTGTGACATGTACACCACTTGTTTTGACTGTGTTTTAGCAAGGGATCCTTACTGTGCTTGGAAACCTCTTGAGGGTTCTTGCGTTGATATTTATCAAGAAAGTGAAACTGAAAG
Seq A exon
GAATTGGATTCAGAACATAGGTGGAGATGCATCTTCTTGTTCTG
Seq C2 exon
ATAAAGTAAGAGAGAATTCGCTACAGCATACGTTCAAGCATGGGAGCACAGCAGAGCTCAAGTGTTCTCAGAAGTCCAATCTGGCACAGGTAGTTTGGAAGTTCAGAGATGACGTACTGAGAGTGGAGAGTCCCAAATACCGGCTACTGGAAAAGGCGCTACTCATCTTCAATTTATCAGAAGGAGACAGTGGTGTTTACCAGTGCCTGTCAGAAGAAAAAGTGAAGAATAAGAAATTCTCTCAGGTGTTGGCTAAGCATGTTTTGGAACTGAAGAAAGTCCAGCATACTACGGCAAGCCCATTGGTGGCAGCTGCATCAACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010697-'15-24,'15-21,18-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0143720=PSI=PU(71.7=65.5)
A:
PF0143720=PSI=PD(26.4=87.5)
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTTGAGGGTTCTTGCGTT
R:
ACCTGTGCCAGATTGGACTTC
Band lengths:
141-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]