BtaEX6035571 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001941 | SEMA4D
Description
Bos taurus sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D (SEMA4D), mRNA. [Source:RefSeq mRNA;Acc:NM_001098160]
Coordinates
chr8:90245958-90249925:+
Coord C1 exon
chr8:90245958-90246130
Coord A exon
chr8:90246216-90246259
Coord C2 exon
chr8:90249716-90249925
Length
44 bp
Sequences
Splice sites
3' ss Seq
TGTGCCCCGTTGTCTTTCAGGGG
3' ss Score
11.32
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GGCAGGAAGTTTGTCTATGCCGGTTCCAACTCAGGCGTGGTGCAGGCCCCTGTGGCCTTCTGCGGGAAGCATGGCACCTGCGAGGACTGCGTGCTTGCCCGGGACCCCTACTGCGCCTGGAGCCCGGCCGTGGCCGCCTGTGTCGCCCTGCACCAGACTGACAGCCCCAGCAG
Seq A exon
GGGACTGATTCAGGAAATGAATGGGGACGCATCCACTTGCCCTG
Seq C2 exon
CCTCATCTCCTCTGCCCTTCCCTCCTCCGGGGTCCTCTTCCCTGTCCTGTCTGGGCCCCGACTCATCTTCCTCTCCCCGAAGCCCCTGGCCGGCCTCGGGCCCAGGGCCTGACCGCCGCCTGCAGGTCACCTTGCTGCCGCCCTTCCTCAGCGACCAGGCCCAGCACGTGCATGCCCTGGGGACCTTCCATCTCTTCTGCCAGGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001941-'27-28,'27-24,28-28=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=0.750 C2=0.394
Domain overlap (PFAM):
C1:
PF0143720=PSI=PU(71.7=65.5)
A:
PF0143720=PSI=PD(26.4=87.5)
C2:
PF138951=Ig_2=PU(26.4=33.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCATGGCACCTGCGAG
R:
GAGGGAAGGGCAGAGGAGATG
Band lengths:
132-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]