GgaEX1052283 @ galGal4
Exon Skipping
Gene
ENSGALG00000005036 | SH2D3C
Description
SH2 domain containing 3C [Source:HGNC Symbol;Acc:HGNC:16884]
Coordinates
chr17:4906124-4909949:+
Coord C1 exon
chr17:4906124-4906307
Coord A exon
chr17:4906974-4907296
Coord C2 exon
chr17:4909910-4909949
Length
323 bp
Sequences
Splice sites
3' ss Seq
CCCCGTAACCCCCATTTCAGCCC
3' ss Score
5.68
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GCTCTCCAGGGGCAGAAAAGGCCAGGATGGACCAAGAGATCCCAGGGAACAGCCCCAGCCCTGGGATGGAGGCACCGAGCCCCAGCCTGGCCCCCAGCCCCAGTGCAGCATCAGGAGCAGAGACCACGGATGGGGATTTCCAGGAAAAGGGGCAAGAACGTCCCAGCGAGAGCTCCCCAGACAG
Seq A exon
CCCCAAAGCCCCTCTAACTCGGCATCGATGAGGCACGCTCTGACATCTGGGGGGTTTTGCGCGGCGCCAGGATCGGGGCAAGGAAAAGGAATTCGTGCCGGCGGTGGGAACCGGCCTCACATTCCTGCCCGCCGCGAAGGGAGGGCCGGAGGAGGGCTGGGACGGGAAGGAGGAGGGTCCGCCACCGCCCGCGCGCCCCACGTCCCGGCTCAGAGCCAGGCACGGGAGCGCCCGCAGAGCTTCTCTCCCCATCCCGGAGCTGAGGCGCTGGCTGAGCCGATGACAGCGGTGGGCAGGAGGTTTCCCACCCTGGGACAGGGCAG
Seq C2 exon
CCACCACGATGGCCTGGAGTCCAGCAGCGAATACGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005036-'2-4,'2-3,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.714
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000008075fB11879
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTCCAGGGGCAGAAAAG
R:
TTCACGTATTCGCTGCTGGAC
Band lengths:
223-546
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]