GgaINT0123783 @ galGal4
Intron Retention
Gene
ENSGALG00000005036 | SH2D3C
Description
SH2 domain containing 3C [Source:HGNC Symbol;Acc:HGNC:16884]
Coordinates
chr17:4906124-4909949:+
Coord C1 exon
chr17:4906124-4906307
Coord A exon
chr17:4906308-4909909
Coord C2 exon
chr17:4909910-4909949
Length
3602 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
TTTTATTTTCCCCCTTCTAGCCA
3' ss Score
9.93
Exon sequences
Seq C1 exon
GCTCTCCAGGGGCAGAAAAGGCCAGGATGGACCAAGAGATCCCAGGGAACAGCCCCAGCCCTGGGATGGAGGCACCGAGCCCCAGCCTGGCCCCCAGCCCCAGTGCAGCATCAGGAGCAGAGACCACGGATGGGGATTTCCAGGAAAAGGGGCAAGAACGTCCCAGCGAGAGCTCCCCAGACAG
Seq A exon
GTATGGCTCTACTGGCTTTGCTCTGCCCACTTTATGCTGCCTGGGCAGGACCGGGGGCTGGGACACAGCAGGGACACAGCGGGGTCCCCGCGGGATGCACCTGGCCAGCAGGACAGCGTGACCCTAGCACACTGTGGCCCTTCTCTATGAGAGCAATGTTTCCTGTGGGATTTCTGCTCCCTCCCATTTCCGGATGGGGTGGAAACACCACTCAGCCCCACTCGGCACGGGTGTCCCTTTGTCCTGCCAGCAGCTCTGTCCCAGCACTGCGGCTCACTGCAGAGAGCTGCAACCTGCACTGACCCATCCCCGCCATCCTTCACTTCCCACTTCCATTCCTTCTGTTCTCCTCCTCTCTTAAGGCACAGAGGCAATCCCAAAACGCAGCCACCCTGTCTCCATTCCGCCCACCTGCCAGTGAAACCCTTCCCCAGGTTTTGGGGACCTCAGCCCTCACAGATGAGGGTTGGATTGTTTAGAGGCTTTGGACCTCAAAACCAACAAGATGAATTTTAGCCCCATCCATCAGCTGGGTACGGGGATCAAAGTCATTCCAACCCAAACACGCGTGCAACCGAGGGGGGCTGATGAGAGATGCCAGGTTTCCCCCAGTAACAATATCCCATCATACCAGCCCTGTTCTTATCCCCGTAACCCCCATTTCAGCCCCAAAGCCCCTCTAACTCGGCATCGATGAGGCACGCTCTGACATCTGGGGGGTTTTGCGCGGCGCCAGGATCGGGGCAAGGAAAAGGAATTCGTGCCGGCGGTGGGAACCGGCCTCACATTCCTGCCCGCCGCGAAGGGAGGGCCGGAGGAGGGCTGGGACGGGAAGGAGGAGGGTCCGCCACCGCCCGCGCGCCCCACGTCCCGGCTCAGAGCCAGGCACGGGAGCGCCCGCAGAGCTTCTCTCCCCATCCCGGAGCTGAGGCGCTGGCTGAGCCGATGACAGCGGTGGGCAGGAGGTTTCCCACCCTGGGACAGGGCAGGTAAGGGTCTGACACCCCGGCATGGCGCAGGGGATGGGGAGGGAGAGGAAGGGATGGGAAGAGGCTTTGCTTGAGGCGCACAAAGCCTCGACGCGAATGCTGGAGGAGCCATCGAGGGCCCGGCATTTGCTGATGGAAAGAGCGAGCGCATCGCCTGCAGCTGCCAAAACCACGGTTGGCTGTGACCCAGCGCTGGGACGGAGCAGCTCGGGGCTGTGGGTGCCCCTGGGGTTCAGAGTCTGGGGGTTTGGGGCTCCGGAGCACCTGTGGAGGGCGTCCCCTTCCCAAAAATGAGTTAGCCCTTAAGCTGGTATGAGTGGGAACCAAGCAGCATGGGAATATCTACCAGTCACCCAGGTGCCTTAACTCTGGGGGCTGCCAGCGTGTGGACCTAGCTCTCCAAAAACTGAGCACCAAATGCCTTTTTGCATTATCCAGGGCTGCTCCGTTGATGAGCTTGGGCATGCTATTTGCTGGGGAAACTGAGGCACAAGAGTGACTGGAGCGGGGCTTGGATTCGGGGGTCTCTGTGCTCTGCTCTAGGCTCAGGGAGCTGTCGTGTGCCGGAGCCGTCCCCATGGCCGGACTGTGTCGTGGAGTGGGTGGGCGGAAGCAGGGCTGGGACAGTGCTGTTCCCCAGCCCTTCCTCCTGTGCAGGCACTTCCCTGGGGAGTGGGACAATCCCTCCCTGCCAGGACATTGTAGGGGGAGCCAGGGGTGGCTGCCCAGAACAGGCAGTACCCATACAGAGGGACCGTGGAGGGGACAAACGTGGCCCTCGGGCACAATGTCCACCCCTGGAGCATCTCCAAGTCTCCTAGTCGAGTTCCGGGCTCCTGAGGCAAGGTGGGCCGAGGCTGCCCACTCACACGAGTGCTTTTGCAGCAGTACTCCCTGCAGGATTGGGCTCCTTTGGAATTTTACTCTGCTGAGCCAGAGCAGTGCTCAGCCCTGGGGATGCTCAGAGCTGGGCGGTGGCCGGGAGGGAGTAGCAGTGACGGCAGCAGGGACACAGCAGGGACACGGTGACCAACAGGAGGTGACCCACAGGCAGGTCACCGGGCAGATGTGACTCAGCTTCCCTCCAAGTACAGGAAATCCCAATTCCCGCAGGGCACGGGTATGGCGCTGCCGTTAGCGGCAAACCCCGCACAGCACGGCCAGCCCGGAGCTCGAAGGAGGCAGCTCTGCCCTATGGATGCAGAGGGGAAACTGAGGCACAGTAGCTCCCTTGGGGCACAGCCCGGGTGTCTAAAGACAAGCAGAGCCTTGGCTCCAGTCTGGGGTTGGAACCTCACCGTGACGTTCCCCAGCTCAGAGCCTGGCACATTTGCAGGTCATCACGGTGCCGTTCTGGACCCCAAAGCAGCAGAAACCCTAAAGAAACCCCAAGCGGGAGCTGCGAGTCCCAGCAGCTCGGCCACTGCACCGCACTCCAAAGGCAGCCCTGGAATTTCTCCCAGGCTCTCGCTACCCCAAAAAATGCCGTTTCCTCCAGGAATGCACAGACCCGGGGGGGGGGGGGGGGGGCTGCAGGCCCCGCTCCCCCCAGCCGCAGCTGCTGCCGTTCCCCAGCACCAGCCCCCCCTCCTCGCAGCGTCTCCCAGCTGCTCTCATGCTCCCGATTTCCTGCCCGGAGGCCCCCGTCCTCCCGCCGGTTTTTCTCACGGCTCTCGCAGCACCAGGCGCTCTCTGCGGCCGTGTGAAAGGCAAACAGGCTGCAGAGGCAGCGCCGGGGTGGGCAGACAGCCCGCAGCTGCCCAAGGCAGCTGTGCCCCCCCCCCCCTCCAAATGCTCTTCTCACTTTTTCACCCCTAGGTTTCCAGCCCCGCTTTTCCTCTCCCAGCAGGGTGGGCATGGGGAAGAGAAGAGCGCAGGGTGGGGGAACCCACAGCTCCCATAGGGCTCACGTTGTCCCACTGCAATGCCACCAGTGGGTCAACACCACCTCGGCCATCCCCAGGGCTTCCCTCCCCAGCTCCGCTGTTATGACCTCTCCACCCTCAGACTTCCTCCTGTTTCCATTGGGCTCATCCACGGACACACACCGGTGCACAAAAGGCAGTCACAGCACTGCTAAATCCTCAGGAAAGGGAAAAGCCCTCAGTTCCCCTTGTGAAATAATGGCACAGAAGTGGCCAGAGCAGCTGTGTGTCAGGCACTGGGTTCGTTATCAGTAGGGGTAAGAGTGAATGTGCCACCAAGGAGAGGGGGAGCTCCAGTCTGAGCCGCAGCATCACCCATCCTTCAGTGACCGTTTGATTTCCATGGGGTTGCACGAAGCTGTAGAGCAGCAATCAGCAACACCTTCCCAGGTGATGCATCCCAACAGCACTCAGTGGTTCTGCCCCAGCACAGCCCCCAGCACCGTGACCCCTGCAGACCCCATCCTGGCCGCCGGCTCTGCCCATGAGCTCCACTCATACGGCCCCAAGCTGATTTGGGGAGAGATCCCATAAAAAGGCCCATTCTTTTCTGATCGCATTAGGAAGGCTAAGCTCTGTCCCGAGTGGGCACGAGGCAAGCAGAGAGGGCAGGGGGCCCTGTGTGCCACCACCATCTTAGCACAACCTGCTGCCCTTTGCTCATGTGTTTTTATTTTCCCCCTTCTAG
Seq C2 exon
CCACCACGATGGCCTGGAGTCCAGCAGCGAATACGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005036:ENSGALT00000008075:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.714
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]