GgaINT0123783 @ galGal3
Intron Retention
Gene
ENSGALG00000005036 | SH2D3C
Description
NA
Coordinates
chr17:5533351-5537138:+
Coord C1 exon
chr17:5533351-5533496
Coord A exon
chr17:5533497-5537098
Coord C2 exon
chr17:5537099-5537138
Length
3602 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
TTTTATTTTCCCCCTTCTAGCCA
3' ss Score
9.93
Exon sequences
Seq C1 exon
ATCCCAGGGAACAGCCCCAGCCCTGGGATGGAGGCACCGAGCCCCAGCCTGGCCCCCAGCCCCAGTGCAGCATCAGGAGCAGAGACCACGGATGGGGATTTCCAGGAAAAGGGGCAAGAACGTCCCAGCGAGAGCTCCCCAGACAG
Seq A exon
GTATGGCTCTACTGGCTTTGCTCTGCCCACTTTATGCTGCCTGGGCAGGACCGGGGGCTGGGACACAGCAGGGACACAGCGGGGTCCCCGCGGGATGCACCTGGCCAGCAGGACAGCGTGACCCTAGCACACTGTGGCCCTTCTCTATGAGAGCAATGTTTCCTGTGGGATTTCTGCTCCCTCCCATTTCCGGATGGGGTGGAAACACCACTCAGCCCCACTCGGCACGGGTGTCCCTTTGTCCTGCCAGCAGCTCTGTCCCAGCACTGCGGCTCACTGCAGAGAGCTGCAACCTGCACTGACCCATCCCCGCCATCCTTCACTTCCCACTTCCATTCCTTCTGTTCTCCTCCTCTCTTAAGGCACAGAGGCAATCCCAAAACGCAGCCACCCTGTCTCCATTCCGCCCACCTGCCAGTGAAACCCTTCCCCAGGTTTTGGGGACCTCAGCCCTCACAGATGAGGGTTGGATTGTTTAGAGGCTTTGGACCTCAAAACCAACAAGATGAATTTTAGCCCCATCCATCAGCTGGGTACGGGGATCAAAGTCATTCCAACCCAAACACGCGTGCAACCGAGGGGGGCTGATGAGAGATGCCAGGTTTCCCCCAGTAACAATATCCCATCATACCAGCCCTGTTCTTATCCCCGTAACCCCCATTTCAGCCCCAAAGCCCCTCTAACTCGGCATCGATGAGGCACGCTCTGACATCTGGGGGGTTTTGCGCGGCGCCAGGATCGGGGCAAGGAAAAGGAATTCGTGCCGGCGGTGGGAACCGGCCTCACATTCCTGCCCGCCGCGAAGGGAGGGCCGGAGGAGGGCTGGGACGGGAAGGAGGAGGGTCCGCCACCGCCCGCGCGCCCCACGTCCCGGCTCAGAGCCAGGCACGGGAGCGCCCGCAGAGCTTCTCTCCCCATCCCGGAGCTGAGGCGCTGGCTGAGCCGATGACAGCGGTGGGCAGGAGGTTTCCCACCCTGGGACAGGGCAGGTAAGGGTCTGACACCCCGGCATGGCGCAGGGGATGGGGAGGGAGAGGAAGGGATGGGAAGAGGCTTTGCTTGAGGCGCACAAAGCCTCGACGCGAATGCTGGAGGAGCCATCGAGGGCCCGGCATTTGCTGATGGAAAGAGCGAGCGCATCGCCTGCAGCTGCCAAAACCACGGTTGGCTGTGACCCAGCGCTGGGACGGAGCAGCTCGGGGCTGTGGGTGCCCCTGGGGTTCAGAGTCTGGGGGTTTGGGGCTCCGGAGCACCTGTGGAGGGCGTCCCCTTCCCAAAAATGAGTTAGCCCTTAAGCTGGTATGAGTGGGAACCAAGCAGCATGGGAATATCTACCAGTCACCCAGGTGCCTTAACTCTGGGGGCTGCCAGCGTGTGGACCTAGCTCTCCAAAAACTGAGCACCAAATGCCTTTTTGCATTATCCAGGGCTGCTCCGTTGATGAGCTTGGGCATGCTATTTGCTGGGGAAACTGAGGCACAAGAGTGACTGGAGCGGGGCTTGGATTCGGGGGTCTCTGTGCTCTGCTCTAGGCTCAGGGAGCTGTCGTGTGCCGGAGCCGTCCCCATGGCCGGACTGTGTCGTGGAGTGGGTGGGCGGAAGCAGGGCTGGGACAGTGCTGTTCCCCAGCCCTTCCTCCTGTGCAGGCACTTCCCTGGGGAGTGGGACAATCCCTCCCTGCCAGGACATTGTAGGGGGAGCCAGGGGTGGCTGCCCAGAACAGGCAGTACCCATACAGAGGGACCGTGGAGGGGACAAACGTGGCCCTCGGGCACAATGTCCACCCCTGGAGCATCTCCAAGTCTCCTAGTCGAGTTCCGGGCTCCTGAGGCAAGGTGGGCCGAGGCTGCCCACTCACACGAGTGCTTTTGCAGCAGTACTCCCTGCAGGATTGGGCTCCTTTGGAATTTTACTCTGCTGAGCCAGAGCAGTGCTCAGCCCTGGGGATGCTCAGAGCTGGGCGGTGGCCGGGAGGGAGTAGCAGTGACGGCAGCAGGGACACAGCAGGGACACGGTGACCAACAGGAGGTGACCCACAGGCAGGTCACCGGGCAGATGTGACTCAGCTTCCCTCCAAGTACAGGAAATCCCAATTCCCGCAGGGCACGGGTATGGCGCTGCCGTTAGCGGCAAACCCCGCACAGCACGGCCAGCCCGGAGCTCGAAGGAGGCAGCTCTGCCCTATGGATGCAGAGGGGAAACTGAGGCACAGTAGCTCCCTTGGGGCACAGCCCGGGTGTCTAAAGACAAGCAGAGCCTTGGCTCCAGTCTGGGGTTGGAACCTCACCGTGACGTTCCCCAGCTCAGAGCCTGGCACATTTGCAGGTCATCACGGTGCCGTTCTGGACCCCAAAGCAGCAGAAACCCTAAAGAAACCCCAAGCGGGAGCTGCGAGTCCCAGCAGCTCGGCCACTGCACCGCACTCCAAAGGCAGCCCTGGAATTTCTCCCAGGCTCTCGCTACCCCAAAAAATGCCGTTTCCTCCAGGAATGCACAGACCCGGGGGGGGGGGGGGGGGGCTGCAGGCCCCGCTCCCCCCAGCCGCAGCTGCTGCCGTTCCCCAGCACCAGCCCCCCCTCCTCGCAGCGTCTCCCAGCTGCTCTCATGCTCCCGATTTCCTGCCCGGAGGCCCCCGTCCTCCCGCCGGTTTTTCTCACGGCTCTCGCAGCACCAGGCGCTCTTTGCGGCCGTGTGAAAGGCAAACAGGCTGCAGAGGCAGCGCCGGGGTGGGCAGACAGCCCGCAGCTGCCCAAGGCAGCTGTGCCCCCCCCCCCCTCCAAATGCTCTTCTCACTTTTTCACCCCTAGGTTTCCAGCCCCGCTTTTCCTCTCCCAGCAGGGTGGGCATGGGGAAGAGAAGAGCGCAGGGTGGGGGAACCCACAGCTCCCATAGGGCTCACGTTGTCCCACTGCAATGCCACCAGTGGGTCAACACCACCTCGGCCATCCCCAGGGCTTCCCTCCCCAGCTCCGCTGTTATGACCTCTCCACCCTCAGACTTCCTCCTGTTTCCATTGGGCTCATCCACGGACACACACCGGTGCACAAAAGGCAGTCACAGCACTGCTAAATCCTCAGGAAAGGGAAAAGCCCTCAGTTCCCCTTGTGAAATAATGGCACAGAAGTGGCCAGAGCAGCTGTGTGTCAGGCACTGGGTTCGTTATCAGTAGGGGTAAGAGTGAATGTGCCACCAAGGAGAGGGGGAGCTCCAGTCTGAGCCGCAGCATCACCCATCCTTCAGTGACCGTTTGATTTCCATGGGGTTGCACGAAGCTGTAGAGCAGCAATCAGCAACACCTTCCCAGGTGATGCATCCCAACAGCACTCAGTGGTTCTGCCCCAGCACAGCCCCCAGCACCGTGACCCCTGCAGACCCCATCCTGGCCGCCGGCTCTGCCCATGAGCTCCACTCATACGGCCCCAAGCTGATTTGGGGAGAGATCCCATAAAAAGGCCCATTCTTTTCTGATCGCATTAGGAAGGCTAAGCTCTGTCCCGAGTGGGCACGAGGCAAGCAGAGAGGGCAGGGGGCCCTGTGTGCCACCACCATCTTAGCACAACCTGCTGCCCTTTGCTCATGTGTTTTTATTTTCCCCCTTCTAG
Seq C2 exon
CCACCACGATGGCCTGGAGTCCAGCAGCGAATACGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005036:ENSGALT00000008075:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.714
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]