BtaINT0132410 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015375 | SH2D3C
Description
Bos taurus SH2 domain containing 3C (SH2D3C), mRNA. [Source:RefSeq mRNA;Acc:NM_001098039]
Coordinates
chr11:98454023-98465407:-
Coord C1 exon
chr11:98464930-98465407
Coord A exon
chr11:98454063-98464929
Coord C2 exon
chr11:98454023-98454062
Length
10867 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
CCTCTCTTCTCTCCTTCCAGGGC
3' ss Score
13.16
Exon sequences
Seq C1 exon
AGTTCTTCAAGTTCAAGGGGTTTGGGAGTCTCTCCAACCTTCCGCGGTCCTTTACTCTGAGACGATCTTTGGCCCCCAACAGTATCCGGCCCCAGGTGGAGGCTGACACCTTCGATGCCACACAGGATGACATGGTGACAGTCCCCAAGAGCCCCCCGGCCTATGCCCGCTCCAGCGACATGTACAGCCACATGGGCACCATGCCTCGCCCCAGCATCAAGAAGGCTCAGGGCAAACAGGCCACCCAGAAGGCCCAGGAAGTTGGCCCTGAGCCCCAGGTGGTACCCCGAAGCCTGCCTGACCCTCCAGGCTTGGAGGCAGCTGAGAAGGTGGTGCCAGGGACCATTGCCTCCAGGGAGGACACCCCAACAGTGGGACCCAACCCTTCAGCAGTGGAAGTGGACCCCACAAGAAAACCTGAGGATGCCAGGCCAGACACAGAAGAAGGGCGAGACCCCAAGAATGTGCCCTCAGAAAG
Seq A exon
GTAGGTGCCCATCAGGGGAGGGTGAGGGCAGAACCTGCAGGGATGGCATGTCCAGCCTCCTGTCAACAGAGTCTGGAGAGGACCGCCCAACACACACATCTGTAGAAAGAAAACAGAATACACACACGCACACACACCCCCTACACATTAACTAAGTGCTCACTATAAACCAGGCTTCCCTAGTGGCTCAGATGGTAAAGAATCTTCCTGCAATGCAGGAGACTCAGGTTTGATCTCTGGGTCGGGAAGATCCTCTGGAGAAGGGAATGGCAACCCACTCCAGTATTCTTGACTGGAGAATCTCATGGACAGAGGAGCCTGGTGGGCTATATATAGTCCATGGAGTCACAAAGAGTCAGACACAACTCGCAACTAACACTTTCACTTCACTTTTCACTACTATACACCAGGCACTGTACTTAGCCCTTCACATGTAATTAATTCTCAGAAAAAAAAAAAAAATCCAGGGAGAGGATACTGTTATTTCCATACCACGGATGAGGAAACTGAGATTCAGAGAAGAAATGCCATCTGCCCCTGTCAGATTGCACATCTAGCAAATGACGAAATTAGGACTTGACCTAAGACCCACCTGACTCCAGCGCCCTAGGCAGCCTTCATCATGAGCCCTCAGCATTGGGCCCAGCCCAACCACTGGATCCCTGCCCTGGGCCCCCACCTCTGAATCTCCGCCTTTAATTCTGCTGGACAACATTGCTCCCCTAGGTCTGGTAAAGCGTTTGCTACCTAACTTGGGTACAGGGTGTGTTGAATTGTTGCAAAAATACAAATAGTGATGTGACCATAGCCCTCAGTTAGTAAGTACCTGTTTTACTAGGTGTCAAAACAAATGTTACTCACTGAAAATTCTGTAAAAGATTATATCAATACTATAACCTGCCCCGCCCCCATCTTACAGCTGGGGAGCCTGAGACTCAGCCAAGGTTGCAGGGGTGGGATTTGAGCAGGAATCTGCCTGTCTCCAGTGGCTGCAACTCATCCATCACATGGTACCCACCACATTCTAAGCCCTACAGCCCTTGGGAGACCCCTCAGCCCCAACCAAAGACATCTTTGTCTTTCCAACTCTCAGAGACTTTGTCTAAACCACACTGGTTATTATAGATGTACTTACTGAAATAAAGAGGGAAAAAGAAAATCTGAGAAAAATTAAACTCTAGGGTTTGTTTTGGAACCTCTCTTGAGTGATTTTGCCCTGAGACACCAAGCACAGCTTCTGTGCGCTGGGATAATTGGTCCTTCAGTGGGGAGGAGGAGGACCTTGTAGAGCTGCAGAGTGAATCCAGACCAGACTGCCTTCCCTTCTCGGAGCCTCGCTTTTCTCATCTGACAAATGCGCACAACGATACCACCTACCTTGTAGGGCTGTGTTGAGAATTCAAGAATAACGTACTCGTAAAAATCTTAGCACAGTGCCTGGCACACAACAAACAACGCAATAAATGGGAAGTGCCTACATTTATGATTTAAAGAACGAATGCTTTCACACCATCTTTACCTACTCCAGGCTGCCTTCTCTTGCCATCCTCTTAAATTCTGCCTCATTCGGGCGTGCAACAAGGATTGTATGTAGGGGTCCAGTGCGGGTCGGGGAGCGTTGTGAGGTAACCCAAAGCCTGAGGTTTGCGGAAGCGGGGCTGGCGGGGCGCAGGGGCGTGTCTGGGAGGCGTGGCCTTTCCATGCTGCTCGGGGACTGTTGGGGAAGCTGGCGTTGGAGAGGGGCGGGGCGAGGCGGAGGCGTGTGCTGGGGGCGTGGCCTTCCCACCCTCCCCGACCCTGACGGACAAGGAGAGGCGAAGGGCGTGTCCGGGGCGGGGCACGTCCTTCCCAGAGGGCGGAGTAGACGGTGGAGAACGCCGAGGGAGGGCGGAGGGGGCGTGTCAGAGGCGTGGCCTCAGGCCAGGCTCCGCCCCTGGAGTCCTGCTGTGAGCTCCACAGCGCCGTAGCCTGAGAAAGGCGGGAGCCTTGGAAACAGGAGGTCCCCGGGTTGCTGGCGGCGACGGCAGGGAACCATGACTGCAGTGGGCCGGAGGTGCCCCGCACTGGGATCCAGAGGGTGAGTGACCGAGCTGGGACCAAGGAGGGCCACCGCCTGGGACCGGGAGTTGGCTGTGGGGGAAATCTGTGCCCCTGGGGCAGCTGACAAACCTGGGTGCGAGTTTAGCATCTGGCACTTTTAAACTTTCTTTTGGTGCAACTCTGACCCCGCTTCAGGCTGAGCATCTGCTGGTCACAACAGTCCCAGAAGAGAGACACTATCACTATCCCTAGTTTACAGATAAGGAAAGAGGTTTACTTGCCCAGTTTGACACAACTAATGAAAGTCAGAACTAGCGTTCAACTCCACCTTCCCGGATCAGACCCCTCAGCAGGTCTTGAGACACCTTTAGAATGCCAGGTCTAGGAGCCAGCCATCCTCCCCTGTGGGCAGAGATAGTCCTGGCAGTGCCTTGGGGTATCAGGCCTGGCTTAGAGTTGACAGAGGAAATAGGGGGACTCTCCCTTCCTGCCCCTGATCACCTGGGATGTCCCGGGGTCCTGAGGAGGGTGGATTAGCAGATCGGATTGAGCCTCTTCTTGGTGCCCTGGGACCCAGTGTCCCACCTGCCTTAGGCCAAGTAGAAGGTGAGGAACTGTTGAACATTTCTTCTAAGAGCCTGTGAAGCTCAACTCTTTGCCAGAGACAGGAGAGCTGCTTTGCAGGTGTGATCTCAGGCTTGTCCTGCCCTGCTCTGGGCGTCCATATCTCCAGCAGCCAAGATAGATCTGGGATGGTCTCTGAGGATCCGTCCAGTTTGGGGATGAGGGCGTTTGAGAACTGCCACTGAGTAAGACCAGGGGCCTCGTTCCTGAGTGTCCCAAGGGGGGTCATCCCTGTGGCTGTTCAGCCTAAGCTGGGGGAGATGTGTCCCTCCCCTACCCCCTAGGAAGCAGGGTGCACCTGGAGCAGAAGGAAGGAAGGGGAAGAGGTGAGGCTGCAGGAGTTTCCTGGTGCCCTGTACTCTGCTGAGATCATGGAGGATGAGAGGAAGGAGGGAGGAGGGGCCAACGACACAGGCAATGAAGGGCCTTTAGCTCCCAAAAAGGAGAGTGCCGCCCAGCCTGCCCCCAGCCCCCATCCCCTCAGCTGCCTGCAGGGAAACAGTGACTCTAGAGAGTCCTGACACTCAACCCTTCAGTTCATGCTGTAGAGGAGGAAGCGGCTGCTTAGAGAGGGAAGGGAGGTCCCCCAAAGCCCCACACTATAGCCACACCCACACTCAGGAATGGTCAGGCCAGGGTCCCACCAGAGGCCGGCCCTGCCTGGAATACTCAGTGGGTCCCCTCTACCACATGGGCCCTGTGAGGTGGAGCCTCTATTTGCTGCATTATACCAGTGAGGAGACTGAGATTCAGAGAGAAAAAGGGACTTTCCTGGGGTCACAGAGAGATTAGAACCAAGGTTTGATTCCAACCTGACCAGCTCCCAAGCCCAAACTCTTAACCACTAGGCCATGTATCACCTGCTGTAAATAAAAATCTCAGAGCTGTCTCTCTCATTACTTCAAATGGCTTCCCATAACCCTGGAAAGGCGGTAACAGGAGCCCATTTTACAGATGAAGACATCAAGGTTTTGTGAGGTTAACAACTTGCTGGAGATGAGACAGTGGAGCTGGAACTTCATTCATTTTAATAGTTACCGAGATGTAGCTATGCCCTAGACACCCCTGTAGATTCTGGGGAGAGAGCCGTGAGCATAGCAGACAAAACCCTGCTCTCATGGAGCCCCCATTCCAGGGTGGGGGAGACAGACGATAAACCAGATAACGAGTTATCTGGTCGGCTAGAAGAGAAAAGCACTAGAGAGAAAGATTTAAATCAAGTAGGGGAACTGGTCTTGGGGTAGTGGCTAAAAGTTATCCAGGGAAAAATTCTCAGTGAGAAACCGATATTTGAGCAAAGGAGATGAGGGAATAGACCCCCCCTACCCTCCCTTTTTTTTTACTTGAAATATAGTCGATGTACAATATTATGTTAGTCTCAGGCATCCTGGGAACAGACCCTCTTGATGGCTAGGGAAGGGTATACTAGGTCAAAGGAACAGTAACTACAAAGGCCCTGAGGTGGGAGCATACTTGGCGTGTTGGCGGAGCAGCAGAAAGCAAGCTGGGGGCTGGGGAGAGGAGGGGTGGAAATGAGGCCAGAGAGGAAATGGGTTCAGATAAGCAAGGCCTGGAAGGCCCAGCAAGGACCTGGCTTTGACTGTAAACGAGATGGCAGCCGTCGCTGGCCTTGAGCAGAGGACGGCCCCACTCTGACTTACGTTTGACAAGCACCTCTCCTTTGAGGAAGATTGGCCCGAGTCTTACTCTTTTCTGAGGTGTCTCACTGGAGCATCCTTCCCTTCCTCCCAGAGACCCAGGCCCCTCTGCTCTCACTCTCAGGGCCGTTCAGCAGGAAACTTGAGACTTGGAGAAGGTAGCACCCCATAGGAGAGCCAGGGGCACCCTGAGCTGCCCGCGCCGGGCACTGAGAATAAGCCAAGACGCTCCCCCCACCCCCATTTCCTTTTGGAATGTTGATTCTGGTCCAAGAATTCCCAGCACTCCCCCGAGTCCCACGACCCTCTCGGCCCTGCAAAGTGACGTCAGTTGCTGGGCATCTGGTAGTGATTACCCACCAGGGGAGGGGGCTGTGGTGGGCCCAGCCTGTTCGGTCTCCTCAGGCTCTGGGCGGCTGGTCCTTGTCTTCCGAAGGGGCCCAGCTGCTCCTGGCTCTCATTTCCTGTGGAGACTTTCTCACAGCCCTCGAGACCCCCAGACGCCTCGGGCTGTGGGAATTGGGCTGGCTTGGGATAGACGGACGGTTCCCCCATCCCCAGCTGGAGCCACATCCCCTCAAACCCTCAGGGGACCCTGTTTACAGAATGCTGGATGCTCGGGGCGTGAGAGCTGGGGAGGACGGGGAGGGGTGCGGGGGGTGGGATACACCAGCTGCTCAGAGGCCCGCTTGACTGTCTTTATAACGTTGAGAGACCCCCTCCCCTCTCTGACCCTCAGTTTCCCCATCTGCTTCTCCAAAAACAGCACCTGTTTCACAGGGTCATTGTGAAGAGTAGACAGAGTAGAGCATTTTTCCTAGACATGGCCTGAGGAAATGTCAGAATACGGGATGCGCGGGCTACCAGCACAACTGTGTAGAGGAGAGGAGACTGGGGCCCGACGAGAGCGACTCGCGCAGCGCCATGCAGCCTCTTTCATCCCAGTTCGGTGCCCTCTCCCGAGCCCCCAGTGTCCTCTTTCTGCTCATGCCCACTCCATGTCCTCTTCCTGATGTCAATTCGGGGCTCCTGGTCTGGTCGAAATATTGGTTTTCGTCGCTTTCCCCTCCCCAGTGTCTCCCTGTCTCCATCCGGGGGCTCCCCAGTGTCTCCCTGTCTCCATCCAGGGGCATCCCCATCTCTAGGAGAGCCTGCCTAGGGCAAGGAGAAAAGCAGAACCAACGTGAGTCTCCTCTGAGTAGCCGTGTGCCCTGCTGTGAAGCGAGGCTTCCACACAGGACCTCAGTCAGCGCTCAGCACTTGCTTTCCCCATTAGCCCTTGGCCAGCAGCTGTTGAGTCCCAGCAACTCCTGGGACCCAGACCCCCCAGCTCTGCCCTGGGAAGAGTGGCCACTGATCTGGCCTCTCCCCACAGGTCTGGCGCCCTCCCTGAGCTATACCAGGGAGCTCACCCCTATCCAGAAGACTGAGGGCACAGGATGGGGGAGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTCCCATCTCAGTAGATGTCAGCTTCATGCTTTGTGTTGCTTTGTTTGGCCAAAAACCCTGTGGTCCTCTGTGCTTCCTCTCTCACTCATAGTCCACGCCCAATCCATCAGGAAATCCTGTGGGTCTCTTTCCAGAATAGGTCCTGACCACTTCTCTCTGTATGTCAACCCAGCCCCATCTGGGGCGCCTTCTCTGTCCTCCTGGAGCACACAGCAGACTTCTTGCCACCTGCCGGGTCTGCCCTCACAGCCCTCGGTCAGCCTCCCCTCCGCTGCCCTGGTGGCGCTCGGGTAAAAAGCTAGGCAGGCCACTGTGCACAAACACTTCCCACCCTGGGACTTCCCTGATGATACAGTGGGTAAGACTCCAGAAGCCCAAGGCAGGGCTCCTGGGTTCGATTCCTGGCCAGGGAACTAGATCCCGCATGCTATAACTAAAGACCCCACGTGATCCTGCATGCTGCAATAAAAAAAACTACCAAGATGGTGCTGCAACTAGCAACTAAGACCTGGTACAGCCAATTAAATAAGCATAAATTTATTTTTTAATGCAATCTCATCTAATTTAAAATGAAGCAAAACCAAAACAACCCCCCAACCCTTCCATCTCTCAAGGAATGAAATCTAAACTCTACTCCATGGCCTGCAAACAGCCAGCCACATAATTTATCATCTAAACCAAGACTTCCTTTGTGAGAGTAAAGAGAAGCCATTTTTATGCCAGAAAAACAAGCATAAACGGGCTTATATTTGCCCCAGCCTACAAGGCCCCGTGGTGACCCAACTGCCCATCTCATGAATTCCCACCCCCAAAATACGTCTGCTTTCCTCATTCTGCTCCAGGCCACTGGGCCTTTGCACTTGCTGTTTTTTTGCCTGGAAAGTTCTTCTTTCAGATTATCACATAGCTTGCTCCTCCCCCTACTTTATTTAGGGCTTTGCTTAATGTCCCCAAGCCTTCCCTGACCACCGTGCCTAGAACTGTCCCTTGTCCTTCGCTCTCTGTCCTCAACCCTGTTTTATTTTCCTCAGTCTCTACCCGAAACAATCACTTTCCATTTATTTGTTGACTCCAGGTACCCGCCATCTCCACCAGGGCACTGACTTTGTCTCGTTCACTGCTGAGCCGCCAGCACACAGCAGGAGCTTGAGAGTTGTTTCCTGCTGCTAGTGAGGACCCACAGCAGCTCAGTGGGTAAAAAATCTGCCTACAATGCAGAAGACCTGGGTTCAATTCCTGGGTCGGGAAGATCTCCTGAAGGAGGGTACAGCAACCCACTCCAGTATTCTTGCTTGGAGAATCCCAAGGACAGAAGAGCCTGGTGGGTTACAGTCCATATGGTGGCAAAGAGTCGCATACGACCGAGCACGCATGCACTAGTGAGGACCTGCTGTATAGCACAAGGAGCTCAGCTCAGTGCTCTGCGATGATCTAGAAGGGATGGTGGGGGTGGGGGGGAGGTCCAAGAGGGAGGGGATATATGTATATACATAGCTGATTGACTTCATTGTACAGCAGAAACTAATATAAAAACATTGTAAAGCAACTATGCGTGCACGGGTACTCAGTTGCTTCGGTCGTGTCTGACTCTCTGCGACCCCGTGAACCATAGCCCACCAGGCTCCTCCTGCCCATGGGATTTTCCAAACAAGAATACTGCGGTGTGTTGCCATGCCCTCCTCCAGAGGATCTTCCCAACCCTGGAACTGAACCTTTATCTCCTGTGTCTCTTGCATTGCAGGCAGATTCTTTACTGCTGAGCCACCGGAGAAGCCCACATTTATTGCCTAAGAAATATATAAAGAGTGTACCCTCAACCAGTATTCATCACTATTATTATTATTAATTCTGTCAGGCTGGACCCTGGTTCTCTGGCTGACACAAGCCTCAATATTCCCATCTGCAAACTAGGGAGGGAGGTCAAACTTCCCCAAATAGAGAAGCCCCAAATTTAAACTGAAATGTGATAAATCGAACAAAATAAGTTGCAAACCGAAAAAGCTGAGCTACAAACGAGACAAAATAAAAACTGTGGGTGAGGTGTGTTTCCAGGGTGTGATTTCATGTAGGGTTCCCCCTAGCTCCTGGGGCAGGGGCTCCTCTTTGGGATGCTGGCTAACAGTCCTCCCTGTTTGGACATTCTAGAGTCCCTGGGGCTGTCCCTCCTTCCTGCAAAGTCCTTCCTGATCTCTAACTATCGTCCCTCAAGCTGCAACCCGGCCCCTGCAGGCTCCAAAAGCCATGTGAGTTCTCTCTGTCCAGCCAAGGTGGGGTGGGGTAAAGTAGGGACCCCTCCCCTTGCTCACCTCCCTGCTCTTCCTGGGTGAGGTGTCCTGTCCCAGCATTTCCGGCCATTCAGGCCCGGAAATCCTCCCACTGTTGGGAACAGACTGGCCAGGACACTGGGATTGCCCCAGCATTTCTTCCTGCTTCCTGTCCACTTCCCCTCAGGAGCTGGGCAGGAGCAGAGTCTTGGGGAGGGGGTGCCCGCCCCAGGGATATCAGGTGGCCAGAGCCAGTTGGGTGCTCGGGTCAAGGCCCAGGCCCGGGAACTCGCCATGGCCCCTCCCTGCCCCTCTGCAACACTCCAGGATTTCTAAGACCTAAAGTGACCATGTCTGCTTACCACCCATGGCCATCATCTGCCCAGACTATGGCCACCACCTCGCCACTGCCTCCCTGCCTGCATCTGTGCCCCTGTGACTTGTTCTCACCCCAGCAGCCAGAGCAGTCCTGTGAAAATGAATCAGATCACACCTTTCCTCGGCTCCAACCCACTAGAGTGGCCCCTAGTTCACTCAGAATAAGAGCTGAAGTCCTCATAATAGCCTCTGCACACTGGCTCCTCACCACCTCTCCCGTCACTCTCCAACAACACTCCCCTCATTCATGCTACCGCAGCCAAGCTGAGCTTCTCACTGCCTTTTGTCCCGACCTCAGGGCCTTTGCACTTCCTGACTGCTCTGCTAGAATACTTTCCCTCCAGATATCCACTGAGCTCCTGCCCTTCCCTCCTTCAGGTCTTTACTGAAGCGTCCCCTTCTCAGTAAGGACTTCCCTGGCTGCCCACCTGGAAGTGAAGGGAGCCCACTCAAGGCTCCCCACCTCCCCGCCCTGCTTCATTGTTCTCTGTAGGGCTTCATCTGACTTGCCCTGTGCTGTCTCCTCTCATCAGAACATCAGCTCCACAGGGTAGGGGCTGGGTTCTTCCTGGAATGGTGCCAGGCACCCCATGAAGATGTTTTTGAATGAACGAATGTCACAGCAGTCCCTGAAGTCCTGAGGACAAGCTCTAGTTCTGGTTGGTGGGCCCTCTGTGACCAGGCCCCTGCCAGCCACCCCTCCACTCTTCCTCAGGGTCCTCCAGGCACTCCGACCTCAGCCTTCCTCCAAAGAGCGCTACTGCCTCCAGCCTCAGGACCTTTGCACATGATATACCTTCTGCCCAGAGGAATTCTCTCCCTTAGAGTCAGAGGAATTTCTATTCAGCCTGCAGATCTCAGTTTGCTTGGAGATTTCTAGAATGTTCTCCCTCCTTTTGTAATGACTAAATCCAGGAATCGAAGTTTCCATGTTTAAAAACTCAGCTCCGTTAATTAATTCATTAATTAATTTCTTATTTTATGGATTTCAAAGGCATTTCCCCTCTAATATTAGTGGTGAAATCAATTAATAAATAATAGTGACAATTGAGCTAAATCAGTTCCATTAATCAGCTGCATCAATTATTTAACCAACCCCTTTAATTGCCTGTATTAGCTGATTTGTTCTAATAACTGATACCACTTATTGCATACATTAGCTTAATTAATTGAATTAATGACCTGCAATTACAGTCCATTACCCTTTATTTCCCCAACGCAGGTTTCAGTCCGAGCTTTACCTTCAGGGTCTCCATCCTGGCCTGAGAGAAAGGGTGAGGCTCCCACAGGGACTCTGGAGAAGAGGCTGCTGTCCTCTTCCACCTTGGCCTTTCCTCGCCACGGGTAGCCTTGCCCTGCAGAGCCATGGGGTCTTCCTGCCCTCTATCTGTCCCCCAGTTTGCTCCCGGGGCATGGTCATATGGCCTTTAGTGGACACTTCCCAGCCTCTGCCTCCTGCTTCTCAGCATCCCCCCGCCCTCCCCTCTGTGAGCTTCGACTTCCCCATCTGTGAAATGGGCATATTTTAAGTGTCTTCATAGAGTGGCTGCAAGCATCCTATGAGAAGAAAAGGTACAAGGTTCCTTAACCCCTTAACCCCAGGGAGCCCCCTGAGGCTCCTCCCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGGAGGGCATTTAAGGCCAAGGACTGGGGATGTGGCTCATGGAGGTCCTCATCAGGAAGGGTGATATTTATTTGAGAGGAACAAATAAATATGTGTTTACTTGGGAACAATAGCCACCCCTGGCCTCTGACTTCTCCAGGCTCCATCCAGGCCACCCTTGAGGGGAGGGGAATCACTTTCACAGCCAGTTGTCACCAGCAACGACAAGGTGATGTGCCGCTGGGTGGGTCCCTCTGATGAGGGGATGAGGGTAGAGCTGGAGGGGAGGAGATTGAGGCCCAGCCTGGGGCCACCAATGTGCGGAGTCAGGGAAGAGGTGGAGAGTGAACATCGGGGGACCACAGTGTCCTAAAGGTGAGTCAAGACAGCAAGCAGGCGCTATGTTAAGCATGTGACATTCATCAGCTCCCAGAGGCCCCGAGACAACCCGATGAAACACAGGCTCAGAGAGGTGAAAGGACCTGCCCAGGGTCACACAGCTGGAGAGTGGAGAAGTAGCCCAGCCTGCCAATTCCAGCCAGTGCTATCACCCATATGCTCAGTCCTGCAGGCGCTCAGTGCTGGCACCAGGCAGGTGGGCAGAAGCTGGCGGCTGAGGATCCAGGCAGGGCTGGGAGCCACTCACCTCTCTTCTCTCCTTCCAG
Seq C2 exon
GGCCACTGCAGAGCCGGAGGCTGGCGGGGACTATGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015375:ENSBTAT00000020433:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.900 A=NA C2=0.714
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development