GgaEX1053190 @ galGal3
Exon Skipping
Gene
ENSGALG00000004965 | SLC27A4
Description
NA
Coordinates
chr17:5607515-5608380:-
Coord C1 exon
chr17:5608311-5608380
Coord A exon
chr17:5608107-5608198
Coord C2 exon
chr17:5607515-5607624
Length
92 bp
Sequences
Splice sites
3' ss Seq
CCTTGGTTCCCCCACCCCAGGTA
3' ss Score
8.1
5' ss Seq
CAGGTAACG
5' ss Score
10.52
Exon sequences
Seq C1 exon
ATAAACTCTTCTATATCTATACCTCTGGCACTACGGGAATGCCCAAGGCTGCTATTGTGGTCAACTGCAG
Seq A exon
GTATTTCCGCATGGCCAGCTTGGTTTTTTATGGTTTCCGCATGAGACCCGATGATGTGATGTATGATTGCCTTCCACTTTACCACGCTGCAG
Seq C2 exon
GGAACATCGTGGGGATTGGGCAGTGCTTGCTGCAGGGCATGACAGTCGTCATCCGCAAGAAGTTCTCAGCCTCGCACTTTTGGGAGGACTGCGTGAAGTACAACTGTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004965-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(5.3=100)
A:
PF0050123=AMP-binding=FE(7.2=100)
C2:
PF0050123=AMP-binding=FE(8.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCTATACCTCTGGCACTACGGG
R:
CGTACAGTTGTACTTCACGCAGT
Band lengths:
167-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]