RnoEX0082092 @ rn6
Exon Skipping
Gene
ENSRNOG00000014369 | Slc27a4
Description
solute carrier family 27 member 4 [Source:RGD Symbol;Acc:1307383]
Coordinates
chr3:8370392-8371623:+
Coord C1 exon
chr3:8370392-8370461
Coord A exon
chr3:8370565-8370656
Coord C2 exon
chr3:8371514-8371623
Length
92 bp
Sequences
Splice sites
3' ss Seq
TTTGCCCTGTACCCTCAAAGGTA
3' ss Score
7.14
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
ATAAGCTCTTCTATATCTACACGTCGGGCACCACGGGGCTACCCAAAGCTGCCATTGTGGTGCACAGCAG
Seq A exon
GTATTACCGAATGGCTGCCCTGGTGTACTATGGATTCCGCATGCGGCCTGATGACATTGTCTATGACTGCCTCCCCCTCTACCACTCAGCAG
Seq C2 exon
GAAACATTGTGGGGATTGGCCAGTGCGTACTCCACGGCATGACTGTGGTGATCCGGAAGAAGTTTTCAGCCTCCCGGTTCTGGGATGACTGTATCAAGTACAACTGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014369-'8-10,'8-8,10-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(10.3=100)
A:
PF0050123=AMP-binding=FE(13.9=100)
C2:
PF0050123=AMP-binding=FE(8.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTATATCTACACGTCGGGCAC
R:
TGTGCAGTTGTACTTGATACAGTCA
Band lengths:
171-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]