GgaEX1053409 @ galGal4
Exon Skipping
Gene
ENSGALG00000011052 | SLC38A11
Description
solute carrier family 38, member 11 [Source:HGNC Symbol;Acc:HGNC:26836]
Coordinates
chr7:19504730-19506069:+
Coord C1 exon
chr7:19504730-19504804
Coord A exon
chr7:19505303-19505379
Coord C2 exon
chr7:19505935-19506069
Length
77 bp
Sequences
Splice sites
3' ss Seq
AGGAGCTGTTCCTATTGCAGCAC
3' ss Score
6.24
5' ss Seq
AAGGTAGTA
5' ss Score
5.69
Exon sequences
Seq C1 exon
GACTGCCCTATTCAATGAAAGAAGCTGGTTTTCCTTTAGGAGTACTGCTTCTGTTTGGGGTTGCCTATATCACAG
Seq A exon
CACAGATTACAAGCTAAGTGAAAGCCAGATGAAGAATAAACGAGGTCTAGCCCTATTTGTCAAGACATCTATCCAAG
Seq C2 exon
ATTATTCCATTATATTACTGATCAAAGGAGGAAATCTCTCCAGTACCAACACCTATCAAGAGCTGGTCAGAAAAACATATGGCTTTTTAGGTTATCTAATACTTTCAACTCTTCAGTTTTTATATCCATTTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011052_MULTIEX1-2/4=1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149013=Aa_trans=FE(50.0=100)
A:
PF0149013=Aa_trans=PD(4.0=33.3)
C2:
PF0149013=Aa_trans=FE(11.6=100)
Main Inclusion Isoform:
ENSGALT00000018002fB12075
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGCCCTATTCAATGAAAGAAGC
R:
ACCTAAAAAGCCATATGTTTTTCTGA
Band lengths:
167-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]