GgaEX0016574 @ galGal4
Exon Skipping
Gene
ENSGALG00000011052 | SLC38A11
Description
solute carrier family 38, member 11 [Source:HGNC Symbol;Acc:HGNC:26836]
Coordinates
chr7:19504206-19506069:+
Coord C1 exon
chr7:19504206-19504323
Coord A exon
chr7:19504730-19504804
Coord C2 exon
chr7:19505935-19506069
Length
75 bp
Sequences
Splice sites
3' ss Seq
ATCTCCTGTATTTTTTAAAGGAC
3' ss Score
8.32
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
ATAGAAACAGATGACCATACAGCCCTGGTTAGTAAGCCCAGGAATAAAGGAGGAAATGGTGATCTGGCATCAGCTGGATTTAACATTATCAACTCCATTATAGGATCAGGTATTATAG
Seq A exon
GACTGCCCTATTCAATGAAAGAAGCTGGTTTTCCTTTAGGAGTACTGCTTCTGTTTGGGGTTGCCTATATCACAG
Seq C2 exon
ATTATTCCATTATATTACTGATCAAAGGAGGAAATCTCTCCAGTACCAACACCTATCAAGAGCTGGTCAGAAAAACATATGGCTTTTTAGGTTATCTAATACTTTCAACTCTTCAGTTTTTATATCCATTTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011052_MULTIEX1-1/4=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.350 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149013=Aa_trans=PU(44.0=55.0)
A:
PF0149013=Aa_trans=FE(50.0=100)
C2:
PF0149013=Aa_trans=FE(11.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGGTTAGTAAGCCCAGGA
R:
TCTGACCAGCTCTTGATAGGTGT
Band lengths:
167-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]