BtaEX0033181 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007650 | SLC38A11
Description
Bos taurus solute carrier family 38, member 11 (SLC38A11), mRNA. [Source:RefSeq mRNA;Acc:NM_001031760]
Coordinates
chr2:31392624-31401291:+
Coord C1 exon
chr2:31392624-31392741
Coord A exon
chr2:31394905-31394979
Coord C2 exon
chr2:31401157-31401291
Length
75 bp
Sequences
Splice sites
3' ss Seq
TGGCACATTTTTTTTTCCAGGAT
3' ss Score
9.06
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
AGCCATCGAGATGACAGAGAAACCCTGGTTTCTGAACATAAGCACAAAGGGAAAACTTGTCGTCAGTCTGCTGCCGTTTTTAATGTTGTCAACTCAATTATAGGGTCTGGTATAATAG
Seq A exon
GATTGCCTTATTCAATGAAGCAAGCTGGCTTTCCTCTGGGAATATTGCTTTTATTCTGGGTTTCATATGTTACAG
Seq C2 exon
ATTTTTCCCTCATTTTATTGATAAAAGGAGCTGCCCTTTCTGGAACAGACACTTACCAGTCTTTGGTCAATAGAACTTTTGGCTTTCCAGGATATCTCTTACTCTCTGTTCTGCAATTTTTGTATCCTTTCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007650_MULTIEX1-2/6=1-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149013=Aa_trans=PU(42.3=55.0)
A:
PF0149013=Aa_trans=FE(48.1=100)
C2:
PF0149013=Aa_trans=FE(11.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATCGAGATGACAGAGAAACC
R:
GTCTGTTCCAGAAAGGGCAGC
Band lengths:
167-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development