DreEX0072764 @ danRer10
Exon Skipping
Gene
ENSDARG00000040257 | slc38a11
Description
solute carrier family 38, member 11 [Source:ZFIN;Acc:ZDB-GENE-050417-122]
Coordinates
chr9:50303113-50322974:+
Coord C1 exon
chr9:50303113-50310282
Coord A exon
chr9:50322484-50322558
Coord C2 exon
chr9:50322840-50322974
Length
75 bp
Sequences
Splice sites
3' ss Seq
CCTGTTTAATTCCTTTATAGGTT
3' ss Score
10.23
5' ss Seq
CAGGTGATT
5' ss Score
5.95
Exon sequences
Seq C1 exon
ATGAAAGCCAAGGCTGTTGAGCAAACGATTTGCCAGCAGCTATAATAGGGTTTAACCGGCTTTGTGTGTCAAACACAGATCAAGTCATTCATGTAGAAACAGCTTTTCCAATAGCCAGCAGCCGATGTCTAAACGCAGCGAGGGGCGTTTATTTTATTCAGTGGGCGGTCTGGAGGAATCAAGCGGACACTTTTAATAGCGCCAGGACATGGGAGACCCTCCATCTGCACCAGCAGGACATCACTGAAGGGCTGTTTTTAATGGAAAACGACAAAAGAGAGAAAAGCGACAAAGCTCAAAAGGTGAGTCTGCACATTATTTCATAAATCCCAATATGCTGAATGCATGCTATTGTTGTATTATTATGTTTTTTTATTCTCAGATGGAAAGTGAAAGGAGTTGTTTGTTGTCCTCACATGATGCTGGGAAAGGTGGAAGTAGTTCGGTGTCCTCGGCCTCATTTAATTTCATCAACTCTATAATAGGAAGCGGGATTATAG
Seq A exon
GTTTACCATATTCCATGAGTCAGGCCGGACTGCCAATGGGTCTTCTGCTGCTTATTCTGGTTGCCTTCATTACAG
Seq C2 exon
ATTACTCCATCATTCTTCTGGTCAGAGGAGGAAATCTGTCCGGCACCCACAGTTACCAATCTCTGGTTCGAAGCACATTTGGCCAGATAGGTTACATCATCGTGTCGGTTCTACAGTTTCTTTATCCATTCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040257-'4-7,'4-6,6-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149013=Aa_trans=PU(19.5=55.0)
A:
PF0149013=Aa_trans=FE(22.1=100)
C2:
PF0149013=Aa_trans=FE(11.5=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCTCACATGATGCTGGGA
R:
TCTGGCCAAATGTGCTTCGAA
Band lengths:
180-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]