HsaEX0059539 @ hg38
Exon Skipping
Gene
ENSG00000169507 | SLC38A11
Description
solute carrier family 38 member 11 [Source:HGNC Symbol;Acc:HGNC:26836]
Coordinates
chr2:164939450-164955525:-
Coord C1 exon
chr2:164955209-164955525
Coord A exon
chr2:164952707-164952781
Coord C2 exon
chr2:164939450-164939556
Length
75 bp
Sequences
Splice sites
3' ss Seq
GGCATTTTATGTTTTTTCAGGAT
3' ss Score
9.15
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
AGAAACATCCTGCAGCATCTCCGTCTCCGGAGGAAAAATACATTTGTCTGGGCGAACTCCGGTGGAAAAGCGCCCCAGGCTGCCACAGCCTAGAGATCTTGGGGCTGCAGCCCTCGCGGCCTGCCGAGGGAGCAGGGGGCGCCCGTGGAACTGGCTCCCTGCAGCTCTGCGGCTACACGCGGACCTCGGCTGTGTGCGAGGTGGCGGAGGAGGCTGGCCGGGTGCGAATCCGTACCCAGCCCCAGCATCTTCCACCTGCTGAGGACCACCGCTCAGCCATGGGCTACCAGAGGCAGGAGCCTGTCATCCCGCCGCAG
Seq A exon
GATTGCCTTATTCAATGAAGCAAGCTGGGTTTCCTTTGGGAATATTGCTTTTATTCTGGGTTTCATATGTTACAG
Seq C2 exon
TTGATCCTGAAAACGTGTTTATTGGTCGCCACTTCATTATTGGACTTTCCACAGTTACCTTTACTCTGCCTTTATCCTTGTACCGAAATATAGCAAAGCTTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169507_MULTIEX1-3/5=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=0.577 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0149013=Aa_trans=PU(15.9=95.2)
C2:
PF0149013=Aa_trans=FE(10.2=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCCAGCCCCAGCATCTTC
R:
CGGTACAAGGATAAAGGCAGAGT
Band lengths:
170-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development