HsaINT0152825 @ hg38
Intron Retention
Gene
ENSG00000169507 | SLC38A11
Description
solute carrier family 38 member 11 [Source:HGNC Symbol;Acc:HGNC:26836]
Coordinates
chr2:164945593-164952781:-
Coord C1 exon
chr2:164952707-164952781
Coord A exon
chr2:164945728-164952706
Coord C2 exon
chr2:164945593-164945727
Length
6979 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
AATTGATGTTCTTGCCACAGACT
3' ss Score
7
Exon sequences
Seq C1 exon
GATTGCCTTATTCAATGAAGCAAGCTGGGTTTCCTTTGGGAATATTGCTTTTATTCTGGGTTTCATATGTTACAG
Seq A exon
GTAAAATACTATATAATTTCTTATTTCTGCAACTTCAACTGTGCAATAACTACACACATACACACACACACACACACATGCTGCAACTGAATTTCCTAGTTAATTAAAAAGTGCATCAAAGAATCCTAAAGAATTTAAGCATTTATGCCTGAGGAGATTTACTTTTCTTACTAATCCTTTAAACAGATTAGAAAAAGTAGAAAAGCATTATATATTACCAAGCCTAAATCCTTTTCATGTGCCTTTTTCACTTTTTGCAGAAAGTAGTAGATGGGGAAGTCATTTTAAAGCTTCATTAAGGCTAAGAGACGACTGTGCTCTGAAAGTGCAGATAGCAGGGCTTCGTGGGCAGGTGCGTGTGAATGAGCAACCTTATTCAGCTGTTGTTTGTGGAGGTAGAAATGAAGCTCTGGTGATCAACCAGCAGGGCTCATCAAGCCTCTCCGCCTGGCTTATGCCTGCCCAAACTCGCTGCCTGCTACTGTCTTTAAATGCAGCAATAAGTTGCTTCTGTATCACATCTTCTCTTCTGCTTCCCCTTCTTCATGTAAATAGTTCATTCACACCCACGTTTTGTCACTCTCCCATTTAAATGCAGGCTTTACAACTCATAATCATCTCCTCTTTTTGTTGTCCTCGTCCCCGCCTTGTCATCCCACCATCTCACCTTATGACAAACATGGCGTCTCCTCTACCTTAGGATCACTGTGAAAGAGGTGGTGGCAATGATCAAAAACAGACACCACTCACAGGAGTTGCTGCTGTGGTGGATTAGATGCCCTTTTACCAGCTAGTGCAAAACACCTCAGCTGCCCTTTGCTCTGGAGTGTTGCCCTGGGCCTCCAGGGGGTCTCCTTGCCTCCACGGGGACCAATGTGTGGTACAGTTGGAGCTCCAGGGCTCCACCACTGCAGTACTTGCTGAACTCTTTCCCCTGCCCTGTCCTCTCATTCCCCTTCTTCTGGAGCATTTCATCCACAGACCCCTTGCCCAAGAATGTCTGTCTCAGCTCTGCTTCTAGAGATCCTCCAAGATGCCATCCCTCGTAAAACCTCAGGCTTCCAAGACCTGCCCAACACTCAGCTATTTTTTCTCAGGCTGACGAAGACAGAGTAAAGCATGAAATAGTTTTCAAATTCAAAGCTAGAGAGGCATTGAGCTCCCTGCCTTCTTCCTACCACCTCCACCCTTAAGACCTAAACTGCTTCTAGTTATTACAGCTCTTAATTTGTAACTTAAGACCCATAAATTAGCAGCATGAGACCTAAGTGTGCTTATTAAGAGTTGCTGGTGTTTAAAAATTGCAGTCTACTTATTGGGGCATTTATTACACTAAAAAAAAAAATTTCATTCAAGGATTTGTCCCTGTCATTCTTAAATTTCCTGTTTCCCATCAGCACTGACAAATAATTGATTTCCACCATAATCACTATGGTTTATTTAAGTGCATTGTAAACATTTACATACATTGTAAACAGGTAGGTAGAAAACATTTAAAAGTATGCATACAAGTTCAGGACTTGATGAGAATGAACAGTATACTAAAGCCAAGTCGTATTATACATAAATAAACTATAATGTGAATAACTTTTTCAACTAATGCCATATATAAACCTATAACAATAACTGTGAGAAGTCCTTTGCAAATTCACATATTGCAAATTTACTTATTAGTGGAAATTACTAACTCATAAATTTACTTGCATGATCCAAATTCTTAAATAACTGATAAATAAAGGATGACCACATAAAAGTGAAAAAAAATATAGGCTGATTCATTTTTTTTCTTAATTAGACTTTTAAGAGCAAAATCTACATGTAGGGTATAATGTTGAATTTTTCTTTAGATTGGAGCTATAATTAATCAGTGGTTTGCCTCTAGAATTATTATTTTGCCTTTTAAGGCCACTAATGAGGTATGTTCAGTTCAACAGCAAGTTTTTCTAAGTTCTGTTTTCATGTTATGAAATGTTGGGGAACAAAAAGAATTATAAAAATTTACAGCAAATAATTCTAATTTGCTTTAAGATTTTCAAATTTGTTGATTAACATAAAATAATTTTTATTGTCTGAGCATACAAAATTATTTAAAAGAAAATTCTTTTGTTAAGTAACAGATTCATTCATGAATTTTTAAAAAGGTTGCATACAATATATTCAAAGGGAGATCAAAATATTATAGTGATTAATACCTAAGATACCTAAAACTTTTAAGGGAATATATTTGTAGCCTGTATTTTATAAGCAAATGAAAGCATTTACATTTATTATTGACTAAATTCTTAACACATCTTTACCTTTAAGTGATCATTGTGAACTTTTATAAAATGCTCAGTGTTCTCATCCCAACCATACCCTTCTTCAGCAAGCCTTCATACCATCTCTGAAATTGGTTGCCTCCTCTCTGTGACATAAGTATATAAATTGTATATAAATTATATGAGAATCAATGAGAATCAAGGAGGAGAATCAATGCCAACTCTGTTGCCAGTAACTTCAGACCTTGGCTAAGCCGTTTTAACCTACTGAAGTCCAAATTTTCTCCTCCAAAAAAGTAAAACATGAACACCTACCTCAAAAAGATTTCACGTTATGGCTGCATTATTCTCAGCATCTAGCTCTTTGATTCTCCTTGGCCAGTGACCTGCTGTTCAGTTTTCCTGCTTCCAGCATCTGTCTACTTTCTCATCAGTCCTCCATGCTGCTGCAAGTTATTTTTATAAAACTTCAGCCTGAACTCTATAAACTCCACAATCAAAACATTCCGAGACTCTGTAAGGACAACAACAACAACAACAACAAAATATTGCATTTAAATTCCTTCATAGTTTGGCTGCATTTTTAGTCTCATTCCAATTATTCTAACTGCTCTCTCACTCTGTGACCAACAGTCACATGCAGACGTTCTCAGCCATCATGGAGAATTCTGTTACCCAGGGAGAGAGAATAAGCTTTCACACCATCTTCCCATTGATAGTCCTCCTGCCTGACATTCCTTTTCTTCTCTACCTGGTGAAATCTTGTTCTTCCTTCAAGGCATTATTCAACTTTTTTGTGAAGCAGTTCCTAATTTTAAGCAAAGGAAGTAGAATTTATTGATATCTCCTTTGTGTTTGCAGGATATTTTAAAATCTGTTAATACTTCTTAGGACTGGGCACGGTGGTTCACCCCTGTAATCCCAGCACTTTGAGAGGCCGAGGCACGTGGATCACTTGAGGTCAGAAATTCGAGACCAGCCTGGCCAATAGGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAACTGGATGTGGTGGCTTGTGTCTGTAGTCTCAGCTACTCAGGAAGCTGAAGCGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCTGAGATTTCACCACTCCACTCCAGCCTGGGCAACAGAGCGAGACTCAGTCTCAACAATAAATAAATTAATTAATTAAATTAAATAAATAAAAATATATTTATTAGGTCATTTATCACATTAAATTAGAATCCGATGGGTAAACATATAGCAATCCTGCTATAGTGATCATTGATTTATTCAGCAAATATATACCGATCACCAGTATGCCAGCTATAGCAATGAGGAACATTATCCCTGCCTTTTTGAAGGTCACAATATAGTGTGTCAAGCAGAAAAAAAAAATAATTATACCACTTTATAAAAAATACCATAATAAAAATATGTACATGATGACAGAGACTGGCATTTAACCTAGCCTCAAAAGAGCAGGAATGTTCTAGGGAGGAGGAGATACTTCCTCTGAGTATTTATGAAAAAAAAAAAAAAAAAGTGAGTTAGCAGAGAAAATGGAAGCAGATGGAAATGTGGGAATGCAAAATGCAACTGAACAAGTGATTTAGTCTGGCTAAAGTGTAGGGTTGGTGTTTGCAAATGGAGAGAGGGGAAGTTGGAGAGGTTTGCAAAGGCAGATAGGAAGCCTCTCATGTAATGATAATCATTACCACTTCCTGAGCTAGATGCTGAGCATAATGCAGTCGTAATGTGAAATCTTTCTGAGGTAGGTGTTCATGTTTTACTTTTTTGGAGGAGAAAATTGAGACTTCAGTAGGTTAAAATGACTTAGGCAAGGTCTGAAGTTACTGGCAATAGAGTTGGGATTTTAATTAAGCTCATGGATTCTGAGGCCAGACTACTACGGCATAAGTCCTGATTCTTTTAATACTTCTGTAGAGATCTATTTACTTAACCTTCATGCCTCACTTTTCTCATCTGTTAAATGGGCATGATAACCAGCACCTACCTCTGGTTGTTGTGAAGATTAAAAATAATTAGTATTTGTAAAGTATTTGGAAAAAGACCTACCACACAGAAAAGCATTGTGTAAGCATTTGCTAGTAGTTTGTGGTTGTTATCATTATTATCTGACTCCAAATACAATACTTTTCCCACTGTCACGTGCAGCTTGTCAAAAATAAGTAGAAATAGCGTTAGTTCCCACTCAGCTTCTATAAGACAGTAGGCATTGTGGTGGACATTAAACACCATAATCCTCACACCACTCTTCAAGGGTGCCATATTGCCTTACTTTACAGATGAGCTCAAATCTTTCACCCAAAGTCACACAGCTAATAAATAATTTTTATCCAAATGCATTAATGGGTCTCCCTGAAATATTTTAAGCAGAAGGCAAAATTAGATTTATGATAATCAATGGCCAGATCCACCTGGTGGAGGGAGAATGTTGAGAATGTCTTGGTAGGAAGGAGAAATCAAAGGTGTCTTTGTTGGGGGCCAGATTGGTGGGTAAAAGAACTATTAGGGGGTTATTGCAGTACTCCAGACAAGAAATTATGAAGGCCAAAGCTCTACCATAAGGCAAGTTAAGATTACAAATTAGGGGCTACATTTGAATATTTCTGATGCAATAGTTAATAGACTTAGTAACCACAGGAATATAGAAAGTAATGAAATAATTTAATGATTAATAAGATAAGTCTGGGGAAATTCTCAAGTTTCTGTTGATACTAATTACAGATTGGAGAAATATGGATAGAGAATCAAATTCCAGAACCAATAACCAAATTAGAATTTATATATTTTAAAATTAAGATGCCTATGAGATCTTCAAAGCAAAATATTTATTAGGCAGCTGGCTGTAGAAGTCTGAAGTTTTGAAGGGGGTCTGAGCTGGAAACACAAATTTAGAGGTTACTAACATCTAAATGAAAATTGCAACCACAGCATAAGTGAGATCACACTAGTACATCTTGAAGGGTGAGAAAAAAGGCCAGGCGCGGTAGCTTACGCCTGTAATCCCAGCAATTTGGGAGGCCTAGGCGGGTGGATCACTTGAGGTCAGGAGTTCGAGACCATCTTGGCCAACGTGGCAAAACCCCGTCTCTGCTAAAAATACAAAAATTAGCCAGGCATGGTGGTGGGCACCTGCAATCCCAACTGATCAGGAAGCTGAGGCAGGAAAATCATTTGAACCCAGGAGGCGGAAGTTGCAGTGAGCCAGGATGGCACCACTGCACTCCAATCTGGGCGACAGAGCAAGACTCTATCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGATAAAAAAGTCCAAGAATCCAGGACTTGAGCAGAGTAAAAGAAACTGGTGAAAAATTGAGTATAAATGACCAAAACAGCAGGAAGAAAACCACAAGAAAGAGATGTCACAAAGGCCAAAGGAGAATGGTTGAGAATAAAAGGAATGATCAACAACGACAACGAGAAACAGTGTTCCGAAAGAGCAGATAAGAGTAAGATCTAGGAAGTATCAACTGGATTTATCAACTTGGAGAACATTGATGATCCTGTTGAAAGAAGTTTCACTGATATGGGAATCAGGGGGAAACCATATTGCAATGGCTTGCATTTTAATGCATTTCCATATTACTTAATGGATAAAAATGAGAAAGAGAAAAAAGAGAACAAGTATCTCACATTGTGTGTGTAGCTGTGTACCAAATAAAACTGCAGTGTCTTTCCGTAAAAACCATTGAGTTAAATGAAAACAATGAGGGCAACTGACTTTTCATTATATAATTTCTGTATATATCTATCTCTAACTTCAATTGAAGTTTCTTAAAATGCAAATTTTTTTTTTTTTTTTTTTTTGAGAGGGAGTCTCGCTGTGTTGCCAAGCTGGAGAGAAGTGGCAGAATCTCGGCTCACTGCAGCTTCTGCCTCCTGGATTTGAGCGATTCTCCTGCCTTAGCCTCCCAAGTAGCTGGGACTACAAGTGTGCGCCACCACACCTGCCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCACGTTGGCCGGGATGGCCTTGATCTCCTGACCTCGAGATCTGCCCACCTTGGCCTCCCAAAGTGCTGGGATTACAAGCGTGAGCCACTGCGCCGGCCAAAAATGTAAATTTCAACAGCAAAATTTCATAGAGTGTCTCTTTCTTAACCATAATAACTATAAAATAAAGTTACTAATTTTATTATATTATAAAACAAATTCTCTGACTCTCCTAAATGTATTGTTTTCTACATGCTACCACACCTTTAATTCTCAGTCTTCACACACTGAATACTTATGAAATATTTGATTACCTACATCCTATTCCTTGACAATTGAGCCTCAACCTGATAATATTTGCTGCATTGGTTACATCAGGAAAGTAAAATGGAACACTGGCAGTTTGACTCGAGTCTGTTTTCTTTTCTGTCCTGTTCTTTGCATGGGTATGTTAAGTATATATTTGCATCTTGATTGAAAAATATGTAACTGGAAACATTACTGTTTAATAAAAGGTAATGTTTTATGAAAAGAAAGTTAGCCTGGCTCTGCTAATACTGCAGCATTAAATTAAATGCTTCTTTAAAATTTCCCCTTTTCTCGATGGTAATTAAGTTAAAACATGAAAAATATTTGTATTACATGTAATCTGACATTTAATTGATGTTCTTGCCACAG
Seq C2 exon
ACTTTTCCCTTGTTTTATTGATAAAAGGAGGGGCCCTCTCTGGAACAGATACCTACCAGTCTTTGGTCAATAAAACTTTCGGCTTTCCAGGGTATCTGCTCCTCTCTGTTCTTCAGTTTTTGTATCCTTTTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169507:ENST00000303735:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149013=Aa_trans=PU(15.9=95.2)
A:
NA
C2:
PF0149013=Aa_trans=FE(13.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains