HsaEX1001941 @ hg38
Exon Skipping
Gene
ENSG00000236283 | AC013463.2
Description
NA
Coordinates
chr2:164949935-164959360:+
Coord C1 exon
chr2:164949935-164950133
Coord A exon
chr2:164956765-164956795
Coord C2 exon
chr2:164959255-164959360
Length
31 bp
Sequences
Splice sites
3' ss Seq
TTCTCCATTCCTTTCCCCAGGCC
3' ss Score
10.16
5' ss Seq
CAAGTTAGT
5' ss Score
4.22
Exon sequences
Seq C1 exon
AGTCTCGGAATGTTTTGATTGTGGAGTTTATAGAGTTCAGGCTGAAGTTTTATAAAAATAACTTGCAGCAGCATGGAGGACTGATGAGAAAGTAGACAGATGCTGGAAGCAGGAAAACTGAACAGCAGGTCACTGGCCAAGGAGAATCAAAGAGCTAGATGCTGAGAATAATGCAGCCATAACGTGAAATCTTTTTGAG
Seq A exon
GCCTTCAGCCCTGGAGTCATCGGTTCATCAA
Seq C2 exon
ACCACTCACTCTGGGAGAAAGCAACTGGCTATGTCATGAGGAAATTGAAACCACCTATGGAGAAAGGCCCACATGGTGAGAAAGTAAAGCCTCTTCCCAATACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000236283_MULTIEX2-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGAACAGCAGGTCACTGG
R:
GCCAGTTGCTTTCTCCCAGAG
Band lengths:
113-144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains