HsaEX1001950 @ hg38
Exon Skipping
Gene
ENSG00000236283 | AC013463.2
Description
NA
Coordinates
chr2:164912312-164950133:+
Coord C1 exon
chr2:164912312-164912435
Coord A exon
chr2:164945584-164945671
Coord C2 exon
chr2:164949935-164950133
Length
88 bp
Sequences
Splice sites
3' ss Seq
TGCAATATTTATCTTCACAGTCA
3' ss Score
7.03
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
AGATTTGCTGCCAATTTGTACTGACTTCTGAAAAATACTTTATCCATTGTCTTCTTACATCAGAATCAACTCCCTAAATTCTTCAGCACTGGCTTTGTAAACTGGTTTCTGGTCTTTGTTTCTG
Seq A exon
TCAACTTACCTATAAAAGGATACAAAAACTGAAGAACAGAGAGGAGCAGATACCCTGGAAAGCCGAAAGTTTTATTGACCAAAGACTG
Seq C2 exon
AGTCTCGGAATGTTTTGATTGTGGAGTTTATAGAGTTCAGGCTGAAGTTTTATAAAAATAACTTGCAGCAGCATGGAGGACTGATGAGAAAGTAGACAGATGCTGGAAGCAGGAAAACTGAACAGCAGGTCACTGGCCAAGGAGAATCAAAGAGCTAGATGCTGAGAATAATGCAGCCATAACGTGAAATCTTTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000236283_MULTIEX4-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTGGCTTTGTAAACTGGT
R:
CCAGTGACCTGCTGTTCAGTT
Band lengths:
175-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains