HsaEX7102828 @ hg38
Exon Skipping
Gene
ENSG00000236283 | AC013463.2
Description
NA
Coordinates
chr2:164912314-164945671:+
Coord C1 exon
chr2:164912314-164912435
Coord A exon
chr2:164922078-164922288
Coord C2 exon
chr2:164945584-164945671
Length
211 bp
Sequences
Splice sites
3' ss Seq
AACTCTTATCTTTATAACAGGTG
3' ss Score
8.52
5' ss Seq
GTTGTAAGA
5' ss Score
3.54
Exon sequences
Seq C1 exon
ATTTGCTGCCAATTTGTACTGACTTCTGAAAAATACTTTATCCATTGTCTTCTTACATCAGAATCAACTCCCTAAATTCTTCAGCACTGGCTTTGTAAACTGGTTTCTGGTCTTTGTTTCTG
Seq A exon
GTGAATAACAATAAGGCAATGTAGAAGAAAGCAAGTCCCATCAAAGGGAGCTCCAGTCTCTATAGACTGATAAAAAGGAGCCTCAGAACTTAAACCTCTGGATCAGGAGAATCAAAAAACATCATGCCTCTCTATGATACCCGCCCAAACTCTTTCAGCTAAACAGAAGCACTTTCAAATATACAATTCCGGCAGAGTCTGCATTTTTGTT
Seq C2 exon
TCAACTTACCTATAAAAGGATACAAAAACTGAAGAACAGAGAGGAGCAGATACCCTGGAAAGCCGAAAGTTTTATTGACCAAAGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000236283-'5-7,'5-6,7-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCCAATTTGTACTGACT
R:
GTCTTTGGTCAATAAAACTTTCGGCT
Band lengths:
205-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains