HsaEX1001949 @ hg38
Exon Skipping
Gene
ENSG00000236283 | AC013463.2
Description
NA
Coordinates
chr2:164848842-164945671:+
Coord C1 exon
chr2:164848842-164849402
Coord A exon
chr2:164912314-164912435
Coord C2 exon
chr2:164945584-164945671
Length
122 bp
Sequences
Splice sites
3' ss Seq
TTATTATTTGTTTTTGGTAGATT
3' ss Score
7.81
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GGGGAGAGTTTAAAGTTGTAGACATATCCATTTTCATTTAAGGAATATGAAGATCAGGGAGGCAAAATATAGAGATATAGAGAGGAAAAACTGAGAGATGATCAGAAATTCAGACGCATTCGGAATGAGCACCCTTGACCATACCAAGAACAAAGACTCTATAAAAATGTGAAGTCTTATTATTGTTCATCCATGTTCTACGTGGGATCCACCCAAGACATTGAAAACTGTACAGAACAGGGTGAAATTGAATCAGATCATTCTGTACTCCTAACAAGGTCCACCCCATGAGAGACTTGCAGCAGAATTAATGACACTGTATATTTTCCTCTACTAACAACAACAAGAACAACAACAACAACAATCTAGGAAAATCAAAGGCAGCCCGACATGGAAAAAAACACAAAATGAATATTTGGATTACAAATAGTGTGATGGGAAGAACACACTGCCAAAAGTCCACCTAGTATGTTGAAATTACTGTTTCTAGCACATATAAG
Seq A exon
ATTTGCTGCCAATTTGTACTGACTTCTGAAAAATACTTTATCCATTGTCTTCTTACATCAGAATCAACTCCCTAAATTCTTCAGCACTGGCTTTGTAAACTGGTTTCTGGTCTTTGTTTCTG
Seq C2 exon
TCAACTTACCTATAAAAGGATACAAAAACTGAAGAACAGAGAGGAGCAGATACCCTGGAAAGCCGAAAGTTTTATTGACCAAAGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000236283_MULTIEX4-2/3=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGCAGAATTAATGACACTGT
R:
GGGTATCTGCTCCTCTCTGTTCT
Band lengths:
258-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains