RnoEX6017105 @ rn6
Exon Skipping
Gene
ENSRNOG00000004966 | Slc38a11
Description
solute carrier family 38, member 11 [Source:RGD Symbol;Acc:1306005]
Coordinates
chr3:51410852-51416183:-
Coord C1 exon
chr3:51416063-51416183
Coord A exon
chr3:51414065-51414139
Coord C2 exon
chr3:51410852-51410986
Length
75 bp
Sequences
Splice sites
3' ss Seq
GGGGCATTTTGTTTTTCCAGGAT
3' ss Score
7.21
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
AGAGAGACAGACCCGAGTGACAGAGAGAGCCTGGTCTCCGGACATGAACACGGAGGGAAATCGAGTCAGTCTGCAGCTGTTTTCAATGTAGTCAATTCTGTTATAGGATCTGGGATAATAG
Seq A exon
GATTGCCCTATTCAATGAAGCAAGCCGGATTTCCCTTGGGAATACTGCTTTTATTCTGGGTCTCATACATCACAG
Seq C2 exon
ACTTTTCCCTAGTTTTATTGATAAAAGGCGGAGCCCTCTCTGGAACAGACTCCTACCAGTCTTTGGTTAACAAGACCTTTGGCTTTCCAGGGTACTTGCTGCTCTCTACCCTACAGTTTATGTACCCTTTTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004966-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.390 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149013=Aa_trans=PU(22.9=53.7)
A:
PF0149013=Aa_trans=FE(26.0=100)
C2:
PF0149013=Aa_trans=FE(46.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGAGGGAAATCGAGTCAGT
R:
AGAGCAGCAAGTACCCTGGAA
Band lengths:
177-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]