GgaEX1053594 @ galGal4
Exon Skipping
Gene
ENSGALG00000011604 | SLC4A4
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 4 [Source:HGNC Symbol;Acc:HGNC:11030]
Coordinates
chr4:49571259-49629417:+
Coord C1 exon
chr4:49571259-49571269
Coord A exon
chr4:49622558-49622630
Coord C2 exon
chr4:49629344-49629417
Length
73 bp
Sequences
Splice sites
3' ss Seq
TATCTTGTGGTTCTGCACAGGAG
3' ss Score
7.33
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
ATGCATCAAAG
Seq A exon
GAGGTGGTTGGCACTACCGTGGAGAGAGGAAATGACATTCTCCATTCAGACAAGCCTGCTGGAGAAGGAAGAG
Seq C2 exon
GATGGAGGACGAGGCAGTACTGGATAGAGGGGCTTCCTTCCTTAAACATGTATGTGATGAAGAAGAAGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011604_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=0.360 C2=0.477
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000018948fB12107
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]