GgaEX1053618 @ galGal4
Exon Skipping
Gene
ENSGALG00000008423 | SLC4A8
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 8 [Source:HGNC Symbol;Acc:HGNC:11034]
Coordinates
chrLGE22C19W28_E50C23:860952-862596:-
Coord C1 exon
chrLGE22C19W28_E50C23:862422-862596
Coord A exon
chrLGE22C19W28_E50C23:862002-862135
Coord C2 exon
chrLGE22C19W28_E50C23:860952-861197
Length
134 bp
Sequences
Splice sites
3' ss Seq
CTCCTCTATTCCCTGGGCAGAGC
3' ss Score
7.79
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
GCTCTTTGGAGGTTTGATCCTGGATGTGAAGCGGAAAGCGCCGTGGTTCTGGAGCGACTTTCGGGATGCGCTGAGTCTGCAGTGCCTGGCATCCTTCCTCTTCCTCTACTGCGCCTGCATGTCCCCTGTCATCACCTTCGGGGGGCTGTTGGGGGAGGCGACTGATGGCCACATA
Seq A exon
AGCGCCATGGAGTCACTGCTGGGCGCGTCCATGACTGGCGTTGTGTATTCCCTCTTTGCTGGCCAACCTCTCACCATCCTTGGCAGCACTGGCCCTGTTCTCGTGTTCGAGAAGATCCTCTACAAGTTCTGCAA
Seq C2 exon
GGACTACGCGCTCTCCTACCTGTCCCTGCGGACGTGCATTGGGCTGTGGACTGCCTTCCTCTGCATGGTGCTGGTGGCCACGGACGCCAGCTGCCTGGTCTGCTACATCACCCGCTTCACCGAGGAAGCCTTCGCTGCCCTCATCTGCATCATCTTCATCTACGAGGCTCTGGAGAAGCTCATCTGCCTGGGAGAGACCTACCCAGTGCACATGCACAGCCAGCTTGACTTCCTCACCCTCTACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008423-'14-17,'14-15,16-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(11.3=100)
A:
PF0095516=HCO3_cotransp=FE(18.0=100)
C2:
PF0095516=HCO3_cotransp=FE(15.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCATGTCCCCTGTCATCAC
R:
GAGCTTCTCCAGAGCCTCGTA
Band lengths:
242-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]