RnoEX6034121 @ rn6
Exon Skipping
Gene
ENSRNOG00000028879 | Slc4a8
Description
solute carrier family 4 member 8 [Source:RGD Symbol;Acc:735164]
Coordinates
chr7:142442165-142444828:+
Coord C1 exon
chr7:142442165-142442339
Coord A exon
chr7:142442869-142443002
Coord C2 exon
chr7:142444583-142444828
Length
134 bp
Sequences
Splice sites
3' ss Seq
TTCTGTTTCCTCCTCCGCAGAGT
3' ss Score
11.36
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
GCTGTTTGGGGGCTTGGTGCTGGATGTCAAACGGAAGGCTCCCTGGTACTGGAGTGACTACCGGGATGCTCTCAGCTTACAGTGTCTGGCCTCCTTCCTGTTCCTGTACTGTGCCTGCATGTCGCCTGTTATCACCTTCGGGGGACTGCTGGGAGAAGCCACGGAAGGACGCATA
Seq A exon
AGTGCAATCGAATCGTTGTTTGGAGCCTCCATGACGGGGATTGCCTACTCTCTGTTTGCTGGGCAGCCTCTCACCATCCTGGGAAGCACGGGCCCTGTGCTGGTGTTTGAAAAGATTTTGTTCAAATTCTGCAA
Seq C2 exon
GGACTACGCCCTTTCATACCTCTCCTTGCGTGCTTGTATCGGGCTGTGGACCGCCTTCCTGTGTATTGTCCTGGTGGCGACTGATGCCAGTTCCCTCGTCTGCTACATTACCCGCTTCACCGAGGAAGCCTTTGCCTCCCTGATTTGCATTATTTTCATCTATGAAGCCATAGAAAAGCTGATTCACCTGGCCGAGACCTACCCCATCCACATGCACAGCCAGCTGGACCACCTGAGCCTTTATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028879-'16-16,'16-15,17-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(11.3=100)
A:
PF0095516=HCO3_cotransp=FE(8.5=100)
C2:
PF0095516=HCO3_cotransp=FE(15.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCTGGATGTCAAACGGAA
R:
CAGTCGCCACCAGGACAATAC
Band lengths:
243-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]