GgaEX1055781 @ galGal3
Exon Skipping
Gene
ENSGALG00000012751 | STAB2
Description
NA
Coordinates
chr1:56838228-56839062:-
Coord C1 exon
chr1:56838979-56839062
Coord A exon
chr1:56838754-56838900
Coord C2 exon
chr1:56838228-56838359
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTCTCTGCTTTCTGTTGCAGGTG
3' ss Score
13.74
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GCCTTGTCCGTCAGAGATATTGCTGGCCCGGGCCCTTTCACCGTGTTCATACCTCACACAAACGTATTAAACAACGACCAGCGA
Seq A exon
GTGAGGGGATGGCTTGCCAAAGGGGTGATGGCTCAAATCCTCAGGTACCACATGGTGGGCTGTGCCAGCCTGTTACACAGGGACCTGACAACACTCACAAACGTCACTTCTCTGCATGGGGACCCCATACAGATCAGCTATGTTCAG
Seq C2 exon
AACTCTCTGTATTTGAACAATAAAGCTGAAATTATATCCAGTGACACCGTTGGTACAAATGGCGTGATTCATGTCATAAACCAAATCCTGATCCCATCACACATTCAGGATTTCCCCCCAGGCTCTAAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012751-'46-48,'46-47,47-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=FE(22.5=100)
A:
PF0246917=Fasciclin=FE(40.0=100)
C2:
PF0246917=Fasciclin=PD(25.8=70.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGTCAGAGATATTGCTGGC
R:
CCTCTTAGAGCCTGGGGG
Band lengths:
210-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]