RnoEX0086555 @ rn6
Exon Skipping
Gene
ENSRNOG00000038948 | Stab2
Description
stabilin 2 [Source:RGD Symbol;Acc:628822]
Coordinates
chr7:27400358-27402499:-
Coord C1 exon
chr7:27402416-27402499
Coord A exon
chr7:27401149-27401295
Coord C2 exon
chr7:27400358-27400498
Length
147 bp
Sequences
Splice sites
3' ss Seq
TCCCTTGGCCTCTCTTCCAGATT
3' ss Score
10.23
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GAGCATGCTGTCCGAGAGCTTGCTGGACCTGGCCCCTTCACCGTGTTCGCGCCTTTGTCTAGCTCCTTCAATCATGAGCCCCGG
Seq A exon
ATTAAAGACTGGGATCAGCAGGGCCTCATGTCCCAGGTTCTTCGCTATCACGTGGTGGGCTGCCAGCAGCTGCTGCTGGACAACCTAAAAGTGACCACAAGTGCCACGACCCTCCAAGGAGAGCCAGTTTCCATCTCTGTCTCTCAG
Seq C2 exon
GACACTGTGTTCATAAACAATGAGGCGAAGGTCCTGTCCAGTGACATCATCAGCACCAATGGCGTCATCCACGTTATAGACAAGTTGCTGTCTCCCAAAAACTTGCTTATCACCCCCAAAGATGCCTTGGGCAGGGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038948-'61-60,'61-59,62-60
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=FE(22.7=100)
A:
PF0246917=Fasciclin=FE(40.3=100)
C2:
PF0246917=Fasciclin=PD(26.1=66.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCTGTCCGAGAGCTTGC
R:
CAAGGCATCTTTGGGGGTGAT
Band lengths:
210-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]