RnoEX0086554 @ rn6
Exon Skipping
Gene
ENSRNOG00000038948 | Stab2
Description
stabilin 2 [Source:RGD Symbol;Acc:628822]
Coordinates
chr7:27401149-27404068:-
Coord C1 exon
chr7:27404021-27404068
Coord A exon
chr7:27402416-27402499
Coord C2 exon
chr7:27401149-27401295
Length
84 bp
Sequences
Splice sites
3' ss Seq
CCCCACGTCCCTTCTTGCAGGAG
3' ss Score
9.82
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
Exon sequences
Seq C1 exon
GAGCTTCCCAAGAACCCCTCGACGTCCCAGTACTTCTTCCAGTTGCAG
Seq A exon
GAGCATGCTGTCCGAGAGCTTGCTGGACCTGGCCCCTTCACCGTGTTCGCGCCTTTGTCTAGCTCCTTCAATCATGAGCCCCGG
Seq C2 exon
ATTAAAGACTGGGATCAGCAGGGCCTCATGTCCCAGGTTCTTCGCTATCACGTGGTGGGCTGCCAGCAGCTGCTGCTGGACAACCTAAAAGTGACCACAAGTGCCACGACCCTCCAAGGAGAGCCAGTTTCCATCTCTGTCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038948-'58-59,'58-58,61-59
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=PU(7.6=56.2)
A:
PF0246917=Fasciclin=FE(22.7=100)
C2:
PF0246917=Fasciclin=FE(40.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCGACGTCCCAGTACTTCT
R:
GATGGAAACTGGCTCTCCTTGG
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]